KEGG   Rhizobium indigoferae: U5G49_001415
Entry
U5G49_001415      CDS       T09660                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rif  Rhizobium indigoferae
Pathway
rif03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rif00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    U5G49_001415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rif03019]
    U5G49_001415
Messenger RNA biogenesis [BR:rif03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     U5G49_001415
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 RMMBL Lactamase_B Lactamase_B_3 Anti-Pycsar_Apyc1 Regulator_TrmB
Other DBs
NCBI-ProteinID: WQN36343
UniProt: A0ABZ0ZDD6
LinkDB
Position
1380112..1381782
AA seq 556 aa
MAKQDELVFLPLGGVGEIGMNLALYGYGPPEHRQWIMVDCGVTFPGPDLPGVDLVLPDIR
FLASERKNLKAIIITHAHEDHYGALADLWPGLNVPVYASGFTSGLLEAKRNFEKATIGEV
PVTPFKAGDTINVGPFSIEGVAVNHSIPEPMSLMIRTPVGNVIHTGDWKIDHEPSLGPLT
DETRFRQLGDEGVLALMCDSTNALRDGVSPSEKDVSESLRKIIENAEGRVAITTFSSNVG
RIRTVAEAAEAAGREVLLLGSSLKRVVNVAQDIGLMEGVKPFISEDEYGYIPRDKVVVIL
TGSQGEARAALAKLSRDEMRNVAFAAGDIVVFSSRAIPGNEKAIQDIKNGLVEQGVHIIT
DTEALVHVSGHPRRNELQRMYEWTRPKIVVPVHGEATHLTAHKELAEQSGIAVVPRVRNG
DILRLAPGPVEVIGEAPHGRIYKDGTLIGDFDEMGIGERKKLSYVGHVAVNVVLDARYDI
VGDPDLVSIGLPVYDDEGEEMEDTLFDAAISAIESIPRARRKDIDMLQEAVRRAIRSAAN
QAWGKKPVVTAFVTRV
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggcgaaacaggacgaactggtattcctgcctctgggcggcgttggcgagataggcatg
aatctcgctctctatggctacggcccgcccgagcatcgccagtggatcatggtcgattgt
ggcgtcacttttccggggcctgacctgccgggcgtcgacctcgtattgcccgatatccgc
ttcctcgccagcgaacgaaagaacctcaaggcgatcatcatcacccatgcgcatgaagac
cattatggtgcgctcgccgacctctggcccggcctcaacgtgccggtctatgcctctggc
tttacatcaggcctgctcgaagccaagcgcaatttcgagaaggcgacgatcggcgaagtg
ccggtgacgccgttcaaggcaggcgatacgatcaatgtcggccccttcagcatcgaaggt
gtggccgtcaaccattcgatccctgagccgatgtcgctgatgatccgcacgccggtcggc
aatgtcatccataccggcgactggaagatcgaccacgagccttcgctcggccccctaacc
gatgagacacgtttccgccagctcggcgacgagggcgtgctggcgctgatgtgcgattcc
accaatgcgttgcgcgacggtgtttcgccctccgagaaggatgtgtccgaaagcctgcgt
aagatcatcgagaatgccgagggccgggtggcgatcaccaccttctcgtcgaatgtcggg
cgcatccgtaccgttgccgaggctgccgaggcggcaggccgtgaagtgctgctgctcggc
agttcgctgaagcgcgtcgtcaacgtcgcccaggacatcggcctgatggaaggcgtgaag
cccttcatctccgaggacgaatacggctatatcccgcgcgacaaggtggtcgtcatcctg
accggcagccagggcgaggcgcgggcagcacttgccaagctctcccgcgacgagatgcgc
aatgtggcgtttgcggcaggcgatatcgtcgtcttttcctcgcgcgccattcccggcaac
gagaaggcgatccaggacatcaagaacggcctcgtcgagcaaggtgtgcacatcatcacc
gataccgaggcgctggtccacgtttcaggccatccgcgccgcaacgagttgcagaggatg
tacgagtggacacggccgaagatcgtcgtgccggtgcacggcgaggcgacgcatctgacg
gcgcacaaggaacttgccgagcaatccggcatcgccgtggtgccgcgcgtgcgcaacggc
gatatcctacggctggcgcccggtcccgtcgaggtgatcggcgaggcgccgcatggccgc
atctataaggacggcacgctgatcggcgatttcgacgagatgggtatcggcgagcggaag
aagctctcctatgtcggccatgtcgctgttaacgtcgtgctcgacgcccgctatgacatc
gtcggcgatcccgatctcgtttcgatcggcctgccggtatatgacgacgagggcgaggag
atggaggacaccctcttcgacgccgcgatcagcgccatcgagagcattccgcgcgcccgt
cgcaaggatatcgatatgctgcaggaggccgtgcgccgcgccattcgctctgctgcgaac
caggcctggggcaagaagcccgtcgtcaccgccttcgtcaccagggtctga

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