Rhizobium indigoferae: U5G49_001422
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Entry
U5G49_001422 CDS
T09660
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rif
Rhizobium indigoferae
Pathway
rif03030
DNA replication
rif03430
Mismatch repair
rif03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U5G49_001422 (dnaE)
03430 Mismatch repair
U5G49_001422 (dnaE)
03440 Homologous recombination
U5G49_001422 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rif03032
]
U5G49_001422 (dnaE)
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_001422 (dnaE)
Enzymes [BR:
rif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U5G49_001422 (dnaE)
DNA replication proteins [BR:
rif03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
U5G49_001422 (dnaE)
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
U5G49_001422 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
WQN36350
LinkDB
All DBs
Position
1387594..1391091
Genome browser
AA seq
1165 aa
AA seq
DB search
MADTAKGSTGEATGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FVALEFSQKAMEDGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPAIVLLAATDAGYER
LVDLVSRAYLGGESNQAVHISASWLEEAGTEGLIALTGALTGPVDVAIKEGHPAQAEARL
LTLKRLFGDRLYVELQRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPI
LPRFTGATDDAEEAERAEASELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKLGVKVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
ETGNNRIYYALAALKGVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYA
GAFDCFDMDRAQLAAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLP
SERLLKEFQVLGFYLTAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFVLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGHLNAKGDGLVSFIVIKEEGKREVEVALP
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggcaaagggttcaacgggtgaggcgaccggcggcacgccgggcttcatc
cacctgagggtccattccgcctattcgctcctcgagggcgcactgccgctgaagaagatt
ctctacaaggcgaccggcgacagccagccggcaattgcgattaccgacaccaacaatctg
ttcgtcgccctcgaattctcccagaaggcgatggaggacggcctgcagccgatcatcggc
tgtcaggtctcgatcgacatggaagacgggttggaaacggaaaagcgcggtggccagcag
gccctggtcaagctgccggcgatcgttcttctcgctgcgacggatgccggttacgaaagg
ctggtcgatctcgtcagccgcgcctatctcggcggcgagagcaatcaggccgttcatatc
agcgcctcctggctggaggaggcaggcacggaagggctgatcgcattgaccggcgccctg
accgggccggtcgacgtggcgatcaaggaaggccatcccgctcaggcggaagcccggctg
ctcacgctgaagcgtctcttcggcgacaggctctatgtcgagctgcagcggcacggcact
tacgacaagcggcacgaacagaagattgtcgggcttgcctatgcccacgacctgccgctg
gttgcgaccaacgaggcgttctttccgacacgcgacgattacgacgcccatgatgcgctg
atggcggtcgcgcacaacgccatcgtgtccgacgacagccgcttccggctgacgccggat
cattatctgaagagccgggccgagatggccaagctcttcgccgacctgccggaagcgctg
gaaaatacgatcgagatcgcgaggcgctgctccttcgtgctgaagacgcgaaagccgatc
ctgccgcgcttcaccggtgcgaccgacgatgccgaggaggccgagcgcgccgaggcgagc
gagctgcgccgccaggcggtcgaagggctggacatgcggctttcgacgctgggcatgtcg
ccgggttacgaggagaaggattatcgcgagcggctggaattcgagctcagcgtcatcgag
cgcatgcgtttccccggttacttcctgatcgttgccgacttcatcaaatgggccaagcag
catgacattccggtcggtcccggccgcgggtcgggcgccggttcgctggtcgcctatgca
ttgacgatcaccgacgtcgatccgctgcgtttttcgctgctgttcgagcgcttcctcaat
ccggaacgcgtctcgatgcccgacttcgacatcgacttctgccaggatcgccgcgaagag
gtgatccgctatgtccaggccaagtatggccgcgagcaggtggcgcagatcatcaccttc
ggttcattgcaggcgcgcgccgcccttcgcgacgtcggccgcgtgctggaaatgccctat
ggccaggtcgacaagatctgcaaactcgtgccgaacaatcccgccaatccgacgccgttg
tccaaggcgatcgaggaagagccgaagctgcaggaggaggcggcgaaagaacctgttgtc
gcgcggctgctcgacatcgctcagaagatcgaggggctttaccgccatgcctcgacccat
gccgccggcatcgtcatcggcgaccggccgctttccaagctggtgccgatgtatcgcgat
ccgcgctcggacatgccggtcacccaattcaacatgaaatgggtggagcaggcgggcctc
gtcaagttcgacttcctcggcctgaagacgctgactgtgctgaaggtcgcggtcgatttc
gtcgccaagctcggcgtcaaggtcgatctcgcagccattcctctcgacgacaagaagacc
tacgagatgctgtcgcgcggcgagacggtcggtgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctttaccgtcccggcccgatggagaacatcccgacctacaatgcccgcaagcacggcgac
gaagagctggaatcgatccatccgatgatcgaccacctgctcaaggaaacccagggcgtc
atcgtctaccaggaacaggtgatgcagatcgcccaggtgctgtccggctattcgctgggc
gaagccgaccttctgcgtcgcgccatgggcaagaagatcaaggccgagatggaccagcag
cgcgaacgctttgtcgttggcgccgtcaagaatggcgtatcgaagccgcaggccgacaat
atcttcgaactgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgcc
tatgccatcgtctcctaccagacggcctacatgaaggcgcattatccggtcgaattcctc
gccgcctcgatgacgctcgacatgtccaacacggaaaaggtcaatgatttccgtcaggat
gccaagcgcctcggcatcgaggtgatcgcgccctcggtgcagacctccttccgccatttc
gagaccggcaataaccgcatctattacgcgctcgccgccctcaagggcgtcggcgaatcc
gccgtcgaccatatcgtcgaggtgcgtggcgacaagccctttgccagcatcgaggatttc
tgcctgcgcatcgatccgcgtcaggtcaatcgccgcgtgctcgaaagcctgatctatgcc
ggcgccttcgattgtttcgacatggaccgcgcccagctagctgccggcctcgaccgcatt
ctcggttatgcccagcgcgcccaggagaacaagctgagcggccagtcggacattttcggc
agtacgttgacgtcggggcctgagaagatctccctgccgccgttctcgccctggctcccc
tccgagcggctgctcaaggaattccaggtgctgggcttctatctcacagcccacccgctc
gattcctacaacaatatcctgcagaagatgcgggtgcagacctttgccgaattttccgcg
gccatcaaacagggcgcggccaatgcgcgccttgccggcaccgtcatctccaagcaggag
cgcaagactcgcaccggcaacaagatgggcatcatcgtcttttcggattcttcgggccag
ttcgaagcggtgctgttttcggaaatgctgaaccagtatcgcgacgtgttggagtcaggc
aaatccttcgtgctgaccgcgacgggcgaggagcggccggagggcatcggcctgcgcatc
cagacgatccagtcgctggaggaaaagtcgctgcagatgcagaaggcgctgcgcgtctat
gtccgcgattccggaccgctgagaatggttgccggccatttgaacgccaagggcgacggc
ctcgtttccttcatcgtcatcaaggaggagggcaaacgcgaggtggaagtggcgctgccg
gagaaataccgcatcacgccggagatcgccgccgcccttcgtgcggcccccggcgtcgtc
gacgtcgagcttgtctga
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