Rhizobium indigoferae: U5G49_001463
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Entry
U5G49_001463 CDS
T09660
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rif
Rhizobium indigoferae
Pathway
rif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U5G49_001463 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rif03021
]
U5G49_001463 (rpoB)
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_001463 (rpoB)
Enzymes [BR:
rif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U5G49_001463 (rpoB)
Transcription machinery [BR:
rif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U5G49_001463 (rpoB)
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U5G49_001463 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
WQN36387
UniProt:
A0ABZ0ZCS7
LinkDB
All DBs
Position
1433366..1437505
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR
DGEGWRIPFKPETLKGAKAITEMVDADTGEVVVEAGKKLTPRLLRQLSDKGLKALKAADD
DLYGNYLAGDIVNYSTGEIYLEAGDEIDEKTLGVILANGFDEIPVLGIDHINVGAYIRNT
LTADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LTVEDTVRILRKDDILAVVRMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRRIVDGKVTNDVLYLSAMEEAKYYVAQANAEMNADGSFVDEFVVCRHAGEVMLAPRDSM
NLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIGARRGGVVDQVDATRIVIRATEDLEAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDEVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIEMLRGQASIAGPKGFKKGSELSNAVVSEYPRSQWW
MFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGRQIGELIDAYKANGNIEPLRKTIGDVVGTGPKAEQVHEFDDDSVLRLADQWKR
GVSIATPVFDGANEADVNDMLRLAGLKDTGQSTLYDGRTGEQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDEAQAAQLPDAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaatggtcgcaggcgcgtacgcaagttttttggtaagatc
cccgaagtcgcagaaatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttt
ctaatggttgaagagccgaagggcggccgacccgacgaaggtcttcaggccgttttcaag
tcggttttcccgatcaccgatttctccggtgcatcgatgctggaattcgtgtcctacgag
ttcgaaccgccgaagttcgacgttgacgaatgccgtcagcgcgacctgacctatgccgcg
ccgctgaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggataccggcgcgaag
tcgatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccaac
aacggcacgtttatcgtcaacggcaccgagcgcgtgatcgtttcccagatgcaccgttcg
ccgggcgtcttcttcgaccatgacaagggcaagagccattcttccggcaagctgctcttt
gctgcgcgcgtaatcccctatcgcggttcctggctcgatatcgaattcgacgccaaggac
atcgtctacgcccgtatcgaccgccgccgcaagatccctgtgacgtcgctgctgatggcg
ctcggcatggacggcgaggaaatcctcgacaccttctacacgaagtcgctctacaagcgc
gacggcgaaggctggcgcattcccttcaagccggaaacgctgaagggtgccaaggcgatc
accgagatggtcgacgccgataccggcgaagtcgtcgtggaagccggcaagaagctgacc
ccgcgcctgctgcgccagctttccgacaagggcctgaaggccctcaaggccgccgacgac
gatctttacggcaattaccttgccggcgacatcgtcaactactccacgggtgagatctac
ctcgaggccggcgacgaaatcgacgagaagacgcttggcgttatcctggcgaatggtttc
gacgagatcccggttctcggcatcgatcacatcaatgtcggcgcctatatccgcaacacg
ctgacagccgacaagaacgagaaccgtcaggacgctctgttcgacatctaccgcgtcatg
cgtccgggtgagccgccgaccatggaatcggccgaagccatgttcaactcgctgttcttc
gatgcggagcgttacgacctctccgccgtcggccgcgtcaagatgaacatgcgcctcgac
ctgaccgtcgaagacaccgtccgcatcctgcgcaaggatgacatcctggccgtggtcagg
atgctggtcgaactgcgcgatggcaagggcgagatcgacgacatcgacaacctcggcaac
cgccgcgtccgttcggtcggcgagctgatggaaaaccagtaccgtctcggcctgctgcgc
atggagcgcgcgatcaaggaacgcatgtcctcgatcgagatcgacacggtcatgccgcag
gacctgatcaacgccaagccggccgccgctgccgttcgcgaattcttcggttcctcgcag
ctctcgcagttcatggaccaggtcaacccgctctcggaaatcacccacaagcgccgtctt
tcggctcttggcccgggcggtctgacccgtgagcgtgccggcttcgaagtccgcgacgtg
catccgacccactatggccgcatctgcccgattgaaacgccggaaggcccgaacatcggt
ctcatcaactcgcttgcgacctttgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgccgcatcgtcgacggcaaggtgacgaacgacgtgctctacctctccgccatggaa
gaggcgaagtactacgtcgcacaggccaacgccgagatgaacgctgacggttccttcgtc
gatgaattcgtcgtctgccgtcatgccggtgaagttatgctcgccccgcgcgacagcatg
aacctgatggacgtctcgccgaagcaggtcgtttcggtcgcagccgcgctcatcccgttc
ctggaaaacgacgacgccaaccgcgcgctcatgggctcgaacatgcagcgtcaggcagtg
ccgctgctgcgtgccgaagctccgttcgtcggtaccggcatggaaccggtcgtcgcccgt
gactccggtgccgccatcggcgcccgccgcggcggcgtggtcgaccaggtcgacgcgacg
cgtatcgttatccgcgccacggaagacctcgaagccggcaaatccggcgtcgatatctac
cgcctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgcccgctggtc
accgtcggtgacgaggtcaaccgcggcgacatcctcgccgacggcccgtcgaccgatctc
ggcgacctggcgctcggccgcaacgcgctcgtcgcgttcatgccttggaacggctacaac
tacgaagactcgatcctgctctccgagcgtatcgttgccgacgacgtgttcacctccatt
cacatcgaggaattcgaagtgatggcgcgcgacaccaagcttggtcctgaggaaatcacc
cgcgatattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggcatcgtc
tatatcggcgctgaagttcagccgggcgatatcctcgtcggcaagatcacaccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggcgaaaaggcctcc
gacgtgcgcgacacctccatgcgcatgccgcccggcacttacggcacgatcgtcgaagtt
cgcgtcttcaaccgccacggcgttgaaaaagacgagcgcgcgatggcgatcgagcgcgaa
gaaatcgagcgtctggcaaaggaccgtgacgacgagcaggcgatcctcgaccgcaacgtc
tacggccgtctgatcgagatgctgcgcggccaggcttccattgccggtccgaagggcttc
aagaagggcagcgagctttcgaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgcggtcgaagatgaaaaggtccagagcgagctcgaagccctgcgtggtcagtac
gacgaatccaagtcgcgcctcgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgatgaaatgccccctggcgtcatgaagatggtcaaggtcttcgtcgccgtaaagcgc
aagatccagccgggcgacaagatggccggccgtcacgggaacaagggcgtcgtctcgcgc
attgtgccggtggaagacatgccgttcctcgaagacggcacgcatgtcgacgtcgttctg
aacccgctcggcgtgccttcgcgcatgaacgtaggccagatcctcgaaacgcatctgggt
tgggcttgcgccggcatgggtcgccagatcggcgaactgatcgatgcatacaaggccaat
ggcaacattgagccgctgcgcaagaccatcggcgatgtcgtcggtaccggcccgaaggcc
gaacaggtccatgagttcgacgatgactcggttctgcgtctcgccgaccagtggaagcgt
ggcgtttcgattgcgacgcctgttttcgatggtgcgaacgaagccgacgtcaacgacatg
ctgcgtctggcaggtctcaaggatacgggtcagtcgacgctctatgacggccgtaccggc
gagcagttcgaccgccaggtgaccgtgggctacatctacatgctgaagctcaaccacttg
gtcgacgataagatccatgctcgttcgatcggtccttactcgctcgtgacccagcagccg
ctgggcggcaaggcgcagttcggcggtcagcgcttcggcgaaatggaagtctgggcgctc
gaagcatacggcgcggcctacacgctgcaggaaatgctgacggtgaagtcggacgacgtc
gccggccgcaccaaggtctacgaagccattgtccgcggagacgacacgttcgaagccggt
attccggaaagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctcagcgtcgag
ctcgagaataccaagcttgacgaggcgcaggcagctcagctgcccgacgcggccgagtaa
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integrated database retrieval system
