Rhizobium indigoferae: U5G49_003066
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Entry
U5G49_003066 CDS
T09660
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rif
Rhizobium indigoferae
Pathway
rif02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U5G49_003066 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rif03021
]
U5G49_003066 (rpoD)
Transcription machinery [BR:
rif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U5G49_003066 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF4351
Imm3
DUF3106
Motif
Other DBs
NCBI-ProteinID:
WQN37918
UniProt:
A0ABZ0ZI27
LinkDB
All DBs
Position
complement(3033824..3035881)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGSSDDDDAGGDEESEGGELAPSSGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKLAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSTAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFARGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaggccgccaagaag
cgcggctatgtgaccatggacgagcttaacgcggtcctgccgtccgaagaagtgacgtcc
gagcagatcgaagacacgatgtcgatgctgtccgacatgggcatcaacgtcattgaagac
gaggaagccgaggaagccggtgcttccggcagcagcgacgacgacgacgccggcggcgac
gaggagagcgaaggcggcgaactcgcgccttcgagcggcacggcgctggcgaccgccaag
aaaaaagaaccgaccgaccgtaccgacgatccggttcgcatgtacctgcgcgagatgggc
tcggtagagcttctttcccgcgagggcgaaatcgcgatcgccaagcgcatcgaggccggc
cgcgagacgatgatcgcgggtctctgcgagagcccgctgaccttccaggcgctgatcatt
tggcgtgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaaacg
acctattccggccctgaagccaaggctgcgccgcagttccagagcccggagaagatcgaa
gccgatcgcaagctcgcagaagagaaggaaaagacccgtcgcgcccgctccggcgacgac
gacatcaccgatgtcggcggcgaaggcctgcctcccgaggaggaggaagaggacgaggac
gaatccaacctttcgctggcggcgatggaagccgagcttcgcccgcaggtgatggagacg
ctggatacgatcgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcggctgtcggcttccggcacgctgtccactgcccaggagcgccgctacaaggaactc
aaagatgagctcatcaaggccgtcaaatctctgtccttgaaccagaaccgcatcgacgcc
ctcgtcgagcagctctacgacatcaacaagcgcctcgtttccaacgagggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgactccttcctggagcagtaccagggcgcc
gagctcgatccgaactggatgaagtcgatcggcaatctggccgcccgcggctggaaggaa
ttcgccaggggcgaaaacacgacgatccgcgacattcgtcaggaaattcagaatctggcg
actgagactggtatctcgatctcggaattccgccgcatcgtccatatggtgcagaagggc
gagcgcgaagcgcgcatcgccaagaaggaaatggtcgaagcgaaccttcgcctggtcatc
tccatcgccaagaagtacacgaaccgcggcctacagttccttgacctcattcaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgaataccgccgcggttacaagttctcg
acctatgcgacatggtggatccgtcaggcgatcacccgttcgatcgccgaccaggcccgc
acgatccgcattccggtgcatatgatcgagacgatcaacaagatcgtccgcacgtcgcgc
cagatgctgcacgagatcggccgcgagccgacgccggaagagctggccgaaaagctcgcc
atgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctcgaa
accccggtgggcgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgacgccgctatccaggcgaatctgcgcgagacgacgacccgtgttctc
gcctcgctgacgccgcgcgaagaacgtgttctgcgcatgcgcttcggcatcggtatgaac
accgaccacacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgtatccgc
cagatcgaggctaaggcgctgcgcaagctgaagcatccgagccgttccagaaagctgcgc
tcgttcctcgacagctaa
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integrated database retrieval system
