Rhizobium indigoferae: U5G49_003682
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Entry
U5G49_003682 CDS
T09660
Name
(GenBank) sigma-54 dependent transcriptional regulator
Organism
rif
Rhizobium indigoferae
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
HTH_50
HTH_7
AAA
AAA_2
HTH_22
Mg_chelatase
HTH_23
MCM
Phage_AlpA
RWP-RK
F_bP_aldolase
HTH_29
HTH_28
HTH_Tnp_1_2
TetR_N
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
WQN38513
LinkDB
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Position
complement(3695321..3696865)
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AA seq
514 aa
AA seq
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MTGYNELKGAGQILVVEDDPVQRRLLKNAIERHGHVVHQAENGRIGLEMVKRDSGLFNVI
VLDLMMPEMTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERI
ATSISNAMKLDQREVKARAGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLE
GESGVGKELVARAIQSGGDRSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGK
FMEADGGTIFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEE
VKNGHFREDLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKSGRRMTVNAGTLA
LLTAYDWPGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQLPEYDVVDHLALVADNTGL
DPDNGYGEDFRASMSGEVHHRLSEVSENAIASVNPAGDVRRLADVEEELIRFALKFYRGQ
MSQVARKLGIGRSTLYRKLKDYGIDPDNPQKDAA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaccggttacaatgagctcaagggagcagggcaaatcctcgtggtcgaagacgacccc
gtgcagcgccgcctgctcaagaacgcaatcgagcgtcacggccatgtcgtgcaccaggcg
gaaaacggccgcatcggcctggaaatggtcaaacgcgacagcggccttttcaatgtcatc
gtgctcgacctgatgatgccggagatgaccggcctcgaattcctcgacgcgcttcacgaa
ttcggcacgcagatccccgtcatcgtgcagacggggcagggcggcatcgagactgtggtg
caggcgatgcgcgccggcgccttcgatttcgtcgtcaagccggtctcgcccgaacgcatc
gccacgtcgatctcgaacgcgatgaagctcgaccagcgcgaggtgaaggcgcgggccgga
cgccggtcgcgctcaggctccgtcggcttcgacgatatcgtctcggcaagcccggcgatg
ctccgggttatcgatcttgctcagcgagcggctcagtccaacatccccgtcgtgctcgaa
ggcgaatccggcgtcggcaaggagctggtggcgcgcgccatccagtctggcggagaccgc
tcgaacaagcccttcgttaccgtcaattgcggggcgatcccgcataatctggtcgagagc
attctcttcggtcacgagaagggcgcgtttaccggcgcgaccgagcgccacatcggcaaa
ttcatggaagccgacggcggcaccatcttcctcgacgagatcggcgacctgccgctcgag
gtgcaggtgaagctcttgcgtgccgtgcagcagggcgagatcgagaccgtcggtgcacgc
accgcacacaaagtcaatgtccgactgatctcggcgaccaacaaggatctgatcgaggag
gtcaagaacggccatttccgcgaggatctctattatcgcctcaacgtcttcccgatcacc
attccggcgctgcgcaaacgcaaggaagacattccgcatctggtgcgcgtctttgccgac
cgcttctccagcgagcagaagagtggccgccgcatgacggtgaatgccggcacgctggct
ttgctgaccgcctatgactggccgggcaatatccgacagctcgaaaacgcgatcttccgc
gcggtcgttctggccgaagggccggagctgaccgaggctgatttcccgcagatcgctgcc
cagcttccggaatatgacgtggtggatcatctggcgctcgttgccgacaataccggcctc
gatcccgacaatggctatggcgaggacttcagggcgtcgatgtcgggagaggtgcaccac
cgcctgtccgaagtatcggaaaacgcgatcgccagcgtcaatcctgccggagacgtgcgt
aggcttgccgatgtcgaggaggaacttatccgattcgcactcaaattctatcgcggacag
atgagtcaagtagcgcgcaagcttggcatcggccgatccacactctatcgcaagctcaag
gattacggcatagaccctgacaatccccagaaagatgcggcttaa
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