Rhizobium indigoferae: U5G49_004395
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Entry
U5G49_004395 CDS
T09660
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rif
Rhizobium indigoferae
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rif03032
]
U5G49_004395 (gyrB)
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_004395 (gyrB)
Enzymes [BR:
rif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
U5G49_004395 (gyrB)
DNA replication proteins [BR:
rif03032
]
Prokaryotic type
DNA Topoisomerases
U5G49_004395 (gyrB)
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
U5G49_004395 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
WQN39209
UniProt:
A0ABZ0ZIF0
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Position
4475072..4477507
Genome browser
AA seq
811 aa
AA seq
DB search
MSDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE
ALAGHADIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYK
VSGGLHGVGVSVVNALSVWLKLKIRRQDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSF
MPSTDTFTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAY
LDRAKKSLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA
LTRQVVSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV
VESLVNEALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA
DCSERDPTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG
TLITALGTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPQLIERGHLY
IAQPPLYKVSRGKSVQYLKDEKALEEYLISQGLEDASLRLGSGEVRAGQDLREVILDALR
MRALLDNLHSRYNRSAVEQAAIAGALNAELASDPARALALANEVAGRLDIIAEETERGWQ
GDVTTDGGLRLERMVRGVREMVVLDMALIGSSDARHIDQLTARLKEIYQTPPSLHRREGD
VEISGPRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATDA
DGLFARLMGDEVEPRREFIQDNALSVANLDI
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacatccgcgacggaaaacggcgtaagcaccgaatatggcgcagattccatc
aaggttctgaagggcctcgatgcggtgcgcaaacgccccggcatgtatatcggcgatacc
gacgacggctccggccttcatcacatggtctatgaagtcgtcgacaacgcgatcgacgaa
gcgcttgccggccatgccgacatagtcaccgtcaccctcaatccggatggctcggtgacc
gtcaccgacaacggtcgcggcatcccgacggacattcacaccggcgagggcgtgtcggct
gccgaagtcatcatgacgcagcttcatgccggcggtaagttcgaccagaattcctacaag
gtttccggcggcctgcacggcgttggcgtctccgtcgtcaacgcgctgtccgtatggttg
aagctgaagatccgccgtcaggacaagatccatgaaatgagcttcacccatggcgtcgcc
gacgctccgctgaaggttacgggcgacgcgccgaatgagaccggcacggaagtgagcttc
atgccgagcaccgacaccttcaccatgacggagttcgactatggcacgctggagcatcgc
cttcgcgagctcgccttcctgaattcaggcgtccgcatcctgctgaccgacaagcgccat
tccgatatcaagcaggaagaactgcgttatgacggcggcctcgaggctttcgtcgcttat
ctagaccgcgccaagaagtcgctcgtcgacaagccggttgccatccgcggcgaaaaggac
ggcatcaccgtcgaagtcgcgatgtggtggaacgacagctatcatgagaacgtgctctgc
ttcaccaacaacatccctcagcgcgacggcggcacgcatatggccggtttccgcgcggcg
ctgacgcgccaggtcgtttcctatgccgacagttccggcatcaccaaaaaggaaaaggta
acgctgcagggcgaagactgccgcgaaggcctgacggcggttctgtcggtcaaggtgccc
gatccgaaattctcctcgcagaccaaggataagctcgtttcctcggaagtccgtcccgtt
gtcgaaagtctcgtcaacgaggcgctgagcacctggttcgaagaacatccaagcgaagcc
aagattcttgtcggcaaggtcgtcgaggcagccgccgcccgcgaagcggcccgcaaggca
cgcgagttgacccgccgcaagggcgcactcgacatcgcttcgctgccgggcaagcttgct
gactgctccgagcgtgatccgacaaaatccgaagtcttcctcgtcgagggcgattctgcc
ggcggctcggccaagcagggccgctcgcgcgagaaccaggcgatcctgcccctgcgtggc
aagatcctgaacgtcgaacgcgcccgtttcgacaagatgctgtcgagtcaggaaatcggc
acattgatcaccgcgctcggcaccggcatcggcaaggacgagttcaatgtcgaaaagctg
cgctaccacaagatcatcatcatgacggacgccgatgtcgacggcgcccatattcgcacc
ctgctgctcaccttcttcttccggcagatgccgcaactgatcgagcgcggccatctctat
atcgcccagccgccgctctataaggtttcgcgcggcaagtcggtgcagtatctgaaggat
gagaaggcgcttgaagaatatctcatcagccagggcctggaagatgcttcgctgaggctc
ggtagcggcgaggttcgcgccggccaggatctgcgcgaggtcatcctcgatgccctgcgc
atgcgcgcgctgctcgacaatctccattcgcgctacaatcgttccgccgtcgaacaagcg
gcgattgccggagcgctcaacgccgagctcgccagcgaccccgctagagcgctggcgcta
gcaaacgaagtggctggacgcctcgacatcatcgccgaggaaaccgagcgcggctggcag
ggcgatgtgacaaccgatggtgggctgcgcctggagcgcatggtccgcggcgtcagggaa
atggtcgtgctcgacatggcgctgatcggttcctcggatgcccgtcacatcgaccagctg
acggcacgactcaaggaaatctatcagacgccgccgtcgctgcatcgccgcgaaggcgac
gtcgaaatctctggtccgcgcgccttgctcgacgcgatcttcgcaagcggccgcaagggc
ctcaccatgcagcgctacaagggccttggcgagatgaatgccgagcagctctgggaaacg
acgctcgatccgaatgttcgctcgctgctgcaggtcagggtcaatgacgccacggacgcc
gatggcctcttcgcccgcctgatgggtgacgaagtcgaaccccggcgcgaattcatccag
gacaatgcgctgagcgttgcaaaccttgatatctaa
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