Rhizobium indigoferae: U5G49_004488
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Entry
U5G49_004488 CDS
T09660
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rif
Rhizobium indigoferae
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rif03016
]
U5G49_004488
Enzymes [BR:
rif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
U5G49_004488
Transfer RNA biogenesis [BR:
rif03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
U5G49_004488
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
WQN39293
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All DBs
Position
4586133..4586759
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AA seq
208 aa
AA seq
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MAATIRFHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAG
QKQAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGL
KDNLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDH
ATACFEFLPTRAKLDLLGWEEADIFAHS
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaccatacgttttcacgaaggcgatatttccgcggccgatgccgcccgctac
accggcgcgatagcaatcgacaccgaaacgctcggcctggtgccgcgccgcgatcggctc
tgcgtcgtccagctttcgccgggtgacggcaccgccgatatcatccgcatcgccgccggc
cagaagcaggcgccaaatcttgtcgccctgctcgaagaccccacccatcagaagatcttt
cattacggccgcttcgatattgccgtgctcttccatactttcggcgtcacgacgaccccg
gttttctgcaccaagatcgcctcgcgcctgatccggacctatacggatcgtcacggcctc
aaggataatctcaaggagatgctcgacgtcgatgtctccaaggcgcagcaatcttccgat
tgggcggccgagacgctgtctccggcccagctcgaatatgccgcgtccgacgtgctttat
ctgcatgcgttgcgcgataagctgacggaacgcctgatccgcgacggccgctacgatcat
gcgacggcctgcttcgaattcctgccgacccgcgccaagctcgacctgctcggctgggaa
gaggccgatatcttcgcccacagctga
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