Rhizobium indigoferae: U5G49_004954
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Entry
U5G49_004954 CDS
T09660
Name
(GenBank) hemagglutinin repeat-containing protein
Organism
rif
Rhizobium indigoferae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fil_haemagg_2
TPS
PT-HINT
DUF6862
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
WRW39611
UniProt:
A0ABZ1DTT4
LinkDB
All DBs
Position
pRinCIP108029b:complement(196098..205739)
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AA seq
3213 aa
AA seq
DB search
MREKTGLGSEARGLGCRLGRFGNRSLAIVLSTLLVFQPMLANAQSVSASTTAAAANQPGV
GAAPNGVPLIDIVTPNAAGLSHNKYDNFNVGTPGLILNNYKGEIGNSNLGGVTPGNPNLN
NSAPASVILNEVTSGNRSALNGPTEVFGGRADVVIANPNGITCDGCGFINTPHATLTTGA
PQIGADGKLNGFIVNGGDVTIGPNGGNFAAGPGAVDLFDIVSRAVHVNGPVYGKDLRVTA
GAANFDYATGNSQALAPISGTPEYAIDGTALGAMQADRIKIVVTEKGAGVRMSGNLAANT
NELSLSADGKISLGNVSGQQGVSISSKAKVTAAKVASKAKLAVQADQGITLDTVAADGDI
LLSSGSGLLSVGGEANSAANLDMLSAAGIAAGSVVAGNALTLSSTSGDIQVGGAAKGGGA
LTITATSGSIAAASLVSGNDITLAAGADIGISGDMLAQGNVTASGRSISADTVVSGLDIA
ATNAAANGSTVLSGAGDIQLAAGSGAVDVDALLSAGDTSVTSAALTAQSVIAHGAIAINA
ATDISGQILSAGNIDLTGSAIAADAIIAGIDFAGTEAAGGNIVLTQSGDLSLAASGDIDT
GTLLAAGNLSASAANLSAAAITSHGAIALSGNTDITGQLLGAGDVSISGGSIAADTIVAG
MDFAATAASPGGAIAVGTAGDLTLDAGSSGSVDIDTLLAAGALLIDAGRFQADNVSGHGA
VTITADTSVTGQLLGAGDVSVTGSAIQAGAIVSGVDFAATAQSANGDIALGQTGALTLKA
TATDISAGNLLAAGNVDASAAGDVSANVVAHQDMTIVAGGTIDLTGQSLAAGNASLSARD
ITVDTLVSGLDFAATAASAGTLKLQQTGSMSLAATSGSITAGNALLSSGALSASASQNIA
YNKLQSLSNAALTASGGQISYGNPTRTAGNLTLNTTNIDLSNGRASNIAAGGTLTLNAAS
ANLANSSLTLGGLALDLSGTADLSGARVNAITTAGGSGDIAIKAAGLTTTAGTALLAAND
LTLTLPSLINAGQLAAGNDLTFNVSGNLTNNATGLAYAGKDASLFVGGVLTNNQGAILAN
HDLQIAGVAAGLRNTEVTNISGLIQAGNDMSILTSNLANRRVATPQWTTGTLVSSGVVSG
FTLNPVAAGLPFGYLETADQNMYQLYAGVDPGLWQDYQPLLWSKATLADGTTYRAWTWIS
ADGPEKVGPIIDWIRDRVPRDANGNPVVDPNNPSRYFIVDEVNFSGSDESTTYTWDWSSH
LSQSVYEDRLVGTLSPEATIRASRNLSIDAANLTNAYSSIEAGGNATLKGSTLTNTGVSL
FRTTTTTCQAQGACTAYDANGNANPSKNIANGTTIVSSVQAIGGVSANIKAGGALSVNFG
SVNNTSAAGSMAGGASLAASSNPGDPLSALTGLTAGGALFNVNSALGGVTANGGSLLTGL
GNIADRIRVDGKALEAAAKPQSGGVDGNIPHQIFLFETRGDFLDVGKFYGSGYFMREIGY
VPETTVPFLGDAYFENQLIDTQLRQLVGEGLGRSTFLAGSDAIEQMKTLLEKGADYAKDH
HLTIGQGLTPEQAAALTESIVLYQWQTVDGVQVLAPVVYVAAADRQKLTGAGAAMAGGSV
NMNVGNLDNSGLIASNGSLTVSGSSIQGSGTFLSRGDTALNATNGITLAAQTMTIGGQNV
VNTNAGVTAGGTLQLAGGSGDLALKGVKVNATGDATLSGKNVTLDAAKVDNAGQQNATGS
QVASGKALTIKATDNVNVIGSSAKAGTTLDVIADKGSVAVVSTDVARNNQSGYTRTLSTD
QQQSQLSAGTDATIKSGDDILLSGSSVKAEGNVALNAGDDINITAAQEHSASTFGKKSSS
SITHVDSEISAGGDLSVTAGNGIGDHDLNIVGSKLAADGKVALDADGDVTIAEATDTATL
DTKLSIKGGFLGKSEKTTTHRETTTAVGSAISGGGGVDITSGKDTVISTSKIEAGNETAA
ADLNITTGGDLVIASGKDTSAKDDKGSRSGFLSKSSSSYKSYDETTVGSQLSATGDINLD
AGKAAVIAGSKIDADGSIEVAADSISIIGAQEAHELEEQRKKSGIGVGSGGGFLAIYGSH
EKNGAQSSTLNVGSALSAGEDVTLTARKTDLNIMGSSVEAENDINLSAARDVNVTPGAES
FSESKEDKRSGFGLSFSAGNGGFSVGIGAQKTKDGSAAQSDTNATSMLSAGRDLNISAGN
NVNLQAAQASAERDVSLFAAKDINLLAANDLTNYQEVHEKTFAGVTLSVSSQLGSAAQSI
MNGAQRLSDPGGVNGLTNSAIAGLSFYEGIKGLKGVSDNLTDGKGLSFNIGLNAGISHQE
SASSSTTSTPVVTDIRAGRSIIMDAQNGSITSDGAQIVAGYDKFGLPTVSDDPLSGDIVL
SAKNGNINLNAATGTSEATDTNSSWSAGVGVNFGCSTAKKNCETSVGVSGSYGKGGSSTT
GTSHTNTHVNGTGDVTIVTNDLALKGATIAGTSIAADVRNLTVESMVDPSKAKADQLSIS
GQIGFGSSGISGVTQKAKGDAVVVAEQSGIHAGIGGLNLNVEKQTTLVGGLITSEAPSDR
NSIDTGTLTVTDIDTHSSWKADTYGGSIGTSGLSLAPPVNAGEKETGKAYSAIGPNIGIA
ITDPEHQTQDLSTIRRDTENTNTSLPGLPDLQNILRDQYRTQADLQAAQKTMAGLVATIA
NEFADQADTPEELAIWGESGPGRALLHAIGAGILGGVNDWEGALRGALGGATSTLLASAI
DKLVSGMLKGTKYEGTLEGQQLATLIGQSLAAAAGAVGGGEGAAYGAANYQFNFMNDKQY
FRLRSMEMACKAGVGGACDIAQELQTLDQITTGLLVSACTADIGSDECIAARVELGAAIH
SIGEQGLGLSDTERRLLEGYYAELQSLQRDPTGTKQILDAIAGIVLSSPRATAALAELNA
GGGRLSNTGSGAGCSFDGSTLVKTAGGFTAISEIRPDETLVWSRDEQGREGYKLVLAKIR
EEHAQTAYLTLKSEATGRQQTIITTTNHPFFAVLSGGRAVPVALPEGQFYRGPIKDGAWI
AAGDLRSGEKLLDADGSWSSVVDIRVEDKPLNAYNLTIADFHTYFVKQAGNDAQETVWVH
NSCLPSVEKAVNSNIDHAANRAVERGVFESAAEARAAYKQLSADISKNGWPSGTIKDPSY
TDRYLVPIGNNGYASYQLAKNGTAKLKTTLIRR
NT seq
9642 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgagaaaaccggccttggttctgaagcaaggggtcttggctgccggctcggcaga
tttggcaatcgctcgcttgccatcgtgctcagcacgctcttggtctttcagccgatgctt
gccaatgcgcagtcggtctctgcgagcaccacggcggccgccgccaaccagccgggcgtc
ggcgccgccccgaacggcgtgccgctgatcgacatcgtcaccccgaatgcagccggcctg
tcgcataacaaatacgacaatttcaacgtcggcacgccgggcctcatcctcaacaactac
aagggcgagatcggcaattccaatctcggcggcgtcacgccgggcaatcctaatctgaat
aattctgctccggcatcggtcatcctcaacgaggtgaccagcggcaatcgctcggctttg
aacggcccgaccgaggtgttcggcggccgcgccgatgtcgtcatcgccaatccgaacggc
atcacctgcgacggctgcggcttcatcaacacgccgcatgcgacgctgaccacaggcgcg
ccgcagattggggccgatggcaagctcaacggctttatcgtcaatggcggggatgtcacc
attggaccgaacggcggcaacttcgctgccgggcccggcgcggtcgatctcttcgacatc
gtctcgcgcgcggtccacgtcaacggcccggtctatggcaaggacctgcgcgtgacggcg
ggtgccgccaatttcgactacgcgacgggcaattcccaggcgctcgctccgatctccggc
acaccggaatatgcgatcgacggcacagcacttggcgccatgcaggccgaccgcatcaag
atcgtcgtcaccgaaaagggcgccggcgtgcgcatgagcggcaatcttgcggccaacacc
aacgaactgtcgctgtcggccgacggcaagatctcgctcggcaacgtctccggccagcag
ggcgtttcgatctcctcgaaggcgaaggtgacggccgccaaagtagcctcgaaagcaaag
ctcgccgttcaggcggatcagggaattaccctcgatacggtagccgccgacggcgacatc
ctgctttcgagcggcagcggcctgttgagtgtcggcggagaggcaaacagtgccgccaac
ctcgatatgttgtcggcggccgggatcgcggccggcagcgtcgtggccggcaatgcgctt
accttgtccagcacgtcgggcgacatccaggtcggtggcgccgcaaagggcggcggtgcg
ctgacaatcaccgcgacatcaggctcgatcgccgcagcctcgcttgtcagcggcaatgac
atcacacttgccgccggcgccgatatcggcatctccggcgatatgctggcgcagggcaac
gtcacggcttcaggccgttcgatctcggccgatacggtcgtctcgggcctcgacatcgct
gcgacgaatgcggcggcaaatggcagcacggttctatcgggcgccggcgacatccagctt
gccgccggcagcggcgccgtcgacgtcgacgcgctcctgtcggccggcgatacgtcggtc
acatcagcggcgctgacggcccagagcgtcatcgcgcatggcgccatcgcgatcaacgcg
gccactgacatcagcggtcagatcctcagtgccggcaacatcgacctcaccggctcggcc
atcgctgctgacgccatcatcgccggcatcgattttgcgggaacggaagcggccggcggc
aatatcgtgttgacgcagagcggcgatctctcccttgccgcgagtggcgacatcgatacc
ggcaccctgcttgcggcaggcaatctctcggcttccgccgccaacctcagtgccgccgcc
atcaccagccatggcgcgatcgcgctttccggcaacactgatatcaccggccaactcctc
ggcgccggcgatgtatcgatcagcggcggctcgattgcggcggacacgattgtcgccggt
atggactttgccgccaccgccgcctcgccgggcggcgccatcgccgtcggcacggccggc
gacctgacgctcgatgccggcagcagcgggagcgtcgatatcgacacgctgcttgccgca
ggcgcgctcctcatcgatgccggtcgtttccaggccgacaatgtcagcggccacggagcc
gttaccatcaccgccgatacatcggtcaccggccagctccttggcgccggcgacgtctcg
gtcacgggttcggccattcaggccggcgccatcgtctctggtgtcgattttgccgccacc
gcacagtcggccaatggcgacatcgcgctggggcagaccggcgctctcacgctcaaggcg
acggccaccgatatcagcgccggcaacctgcttgccgccggaaacgtcgacgccagcgca
gcgggtgatgtcagcgccaatgtcgtcgcccatcaggacatgacgatcgttgccggcggc
acgatcgatcttaccggccagtcgcttgccgccggcaacgccagcctctcggcgcgggat
atcaccgtcgatactctcgtttccggcctggacttcgcggccaccgctgcatccgccggc
acgctgaagctccagcagaccggcagcatgagccttgcggccacaagcggttcgatcacg
gccggcaacgccctactgagcagcggcgctctttcggccagcgcaagccagaatattgcc
tataacaagctccagagcctcagcaacgctgcgctcacggcgtcgggcggccagatcagc
tacggcaatcccacccgcaccgccggcaacctgacgctcaacacgaccaatatcgatctc
tccaatggccgggcgagcaacattgctgccggcggtacgctgacgctcaatgccgcaagc
gccaaccttgccaacagcagcctcactctcggcggcctggctctcgatctctccggcacg
gccgatctcagtggcgcccgggtcaatgccattaccactgccggtggttcgggcgatatc
gccatcaaagcggccggtcttacgacgacggccggcaccgcgctgctcgccgccaacgac
ctgacgctgacgctgccgtcgctgatcaatgccgggcaattggccgccggcaacgatctc
accttcaatgtttccggcaacctcaccaacaacgccacgggcctcgcctatgccggcaaa
gacgccagcctcttcgtcggcggcgtgctcaccaacaatcagggcgccatcctcgccaac
catgacctgcagatcgccggggtggcggccgggctgagaaacactgaagtcaccaatatt
tccgggctgattcaagccggcaacgacatgtcgatcctgaccagcaacctggccaacagg
cgggttgccacgccgcaatggacgaccgggacgctggtgtcttcaggcgtcgtcagcggt
ttcacgctgaatcccgttgccgccggcctgccgttcggttacctcgagaccgcagatcag
aacatgtaccagctctatgcgggcgtggatccggggctgtggcaggattatcagccgctg
ctctggtcgaaggcgacgcttgccgacggcacgacgtaccgcgcctggacctggatctca
gccgacggaccggagaaggtcgggccgatcatcgactggatcagggaccgggtgccgagg
gacgcgaacggcaatccggttgtcgatcccaacaatccgtcgcgctatttcatcgtcgac
gaggtgaatttcagcggctcggacgaaagcaccacctacacatgggattggtcgtcccat
ctcagccagtcagtctatgaggaccgcttggttggcacgctcagcccggaagcgacgatc
cgggcgagccgcaacctttcgatcgacgccgcgaatctcaccaatgcctacagctcgatc
gaggccggcggcaacgcgacgctgaagggctcaacgctgaccaataccggcgtgagcctg
tttcgcacgacgacgacgacctgccaggcgcagggcgcctgcacggcctatgatgccaac
ggcaacgccaatccctcgaagaacatcgccaacggcacgacgatcgtcagctctgtccag
gcgatcggcggcgtctcggccaacatcaaggccggcggtgcgctctccgtcaatttcggc
agcgtcaacaacacgtccgcagccggctcgatggcaggcggcgccagcctggcggcatca
agcaatcccggcgatccgctttcagcgctcaccggcctgaccgccggcggtgcgttgttc
aatgtcaactcggcgctcggcggcgtcaccgccaatggcggcagcctgcttaccgggctc
ggcaatatcgccgaccgcatccgcgtcgacggcaaagcccttgaggccgccgccaaaccg
caatcgggtggcgtcgacgggaacataccccaccagatattcctgttcgaaacccgcggc
gacttcctcgatgtcggcaagttctacggctccggctatttcatgcgcgagatcggctac
gtgccggagacgacggttccgttcctgggcgatgcctatttcgagaaccagttgatcgac
acgcagttgcggcagctcgtcggcgagggattgggacgtagcaccttcctcgccggcagt
gacgccatcgagcagatgaagacgctgctcgagaagggcgccgactatgccaaggaccac
cacctgaccatcggccagggcctcacgcctgagcaggcggcagccctcaccgagtcgatt
gtcctctaccagtggcagaccgtcgacggcgttcaggtgctcgcgcccgttgtctacgtc
gccgccgccgaccggcagaagctgaccggcgccggcgccgccatggcgggcggctcggtc
aatatgaatgtcggcaatctcgacaattccggcctgatcgcatccaatggcagtcttacc
gtctccggcagctccatccagggcagcggcacgttcctgtcgcgcggcgacacggcgctc
aatgccaccaacggcatcacgcttgccgcccagacgatgacgatcggcggccagaacgtc
gtcaataccaatgcaggcgtgacggcgggcggcactctgcagcttgccggcggcagcggc
gatctggcgctgaagggcgtcaaggtcaatgccacaggcgatgccacgctctccggcaaa
aacgtgacgctggatgccgctaaggtcgacaatgcaggccagcaaaatgccaccggcagc
caggtggccagcggcaaggccctgacgatcaaggccaccgacaacgtcaacgtcatcggc
agctccgccaaggcgggaacgacgctcgatgtgatcgccgacaagggttcggtagccgtg
gtgtcgaccgatgtcgcccgcaacaaccaatccggctacaccaggacgctctccacggac
cagcagcaatcgcagctttccgccggcacggatgcgacgatcaaatcaggcgacgacatc
ctgctttccggctcctccgtcaaggccgaaggcaacgtcgcgctgaatgccggcgacgat
atcaacatcaccgccgcacaggagcattccgcatccaccttcggcaagaagtcctcctcg
tcgatcacccatgtcgactcggagatatccgccggcggcgacctctctgtgacggcgggc
aacggcatcggcgatcacgacctcaacatcgtcggcagcaagcttgccgccgacggcaag
gtcgctctcgatgccgacggcgacgtgacgatcgccgaagccaccgacaccgcgaccctt
gacaccaagctcagcattaagggcggtttcctcggcaagagcgagaagacgaccacccat
cgggaaacgacgacggccgtcggttccgccatatcaggcggtggaggcgtcgatatcacc
tcgggcaaggacacggtcatctcaacctcgaagatcgaggccggcaacgagaccgccgcc
gcggacctgaacatcaccaccggcggcgacctcgtcatcgcctccggcaaggacaccagc
gccaaggatgacaagggctcgcgcagcggcttcctctccaagagctcgtccagctacaag
agctacgacgagacgacggtcggctcgcaactgagcgccaccggtgatatcaatctcgac
gcaggcaaggcagcagtcattgccggttcaaagatcgatgccgacggctcgatcgaggtc
gcggccgacagtatttcgatcatcggggcgcaggaggcgcacgagctcgaggagcagcgc
aagaaatccggcatcggcgtcggttccggcggtggcttcctggcaatctacggcagccac
gagaaaaacggtgcgcagtcctctacgctcaatgtcggctcagcgctttccgcgggcgag
gatgtcaccctcaccgcgcgcaagaccgatctcaacatcatgggctcgtcggtcgaggct
gagaacgacatcaacctgtcggcggcacgcgacgtcaacgtgacgccgggcgccgagagc
ttctcggaatcgaaagaggacaagcgatccggcttcggcctgtccttctcggccggcaat
ggcggtttctcggtcggcatcggcgcgcaaaagaccaaggacggaagcgcagcgcagtcg
gacaccaatgccacgtccatgctctcggccggtcgcgacctcaacatctccgccggcaac
aatgtcaacctgcaggccgcgcaggcgtcggccgagcgcgacgtcagtctcttcgccgct
aaggacatcaatcttctcgcggccaacgacctcaccaattaccaggaggtgcatgagaag
acattcgccggcgtgactctctccgtctcgagccagttgggaagtgcagcccagagcatc
atgaacggagctcagcgcctgtcggatccaggtggcgtcaacgggctgaccaacagtgcg
atcgcgggcctcagcttctatgagggtatcaagggcctgaagggcgtctctgacaatctc
accgacggcaaggggctttccttcaacatcggtttgaatgcgggtatcagccatcaggag
agcgcatcctcatcgacgacatccacgcccgtcgttacggatatccgtgctggtcgctcg
atcatcatggacgcgcagaacggatccattacgagcgatggcgcgcagatagtggccggc
tacgacaagttcggcctgccgaccgtctccgacgacccgctgtccggcgatatcgttctg
tcggcgaagaatggcaacatcaatctcaatgctgccaccggcacgtctgaagcgactgac
acgaacagctcatggagcgccggcgtcggcgttaatttcggctgtagtacagcgaagaaa
aactgcgagaccagtgtcggcgtcagcggttcctatggcaagggcggctccagcacgacc
ggcaccagccacaccaacacccatgtcaatgggaccggcgatgtcacgatcgtcaccaac
gatctcgccttgaaaggtgcgacgatcgcaggcacgtccattgcggccgacgtgagaaac
ctgacggtcgagagcatggtggatccctccaaggcaaaggccgaccagctcagcatctca
ggccagattggcttcggctcctccggcatctccggcgtcacgcagaaagccaagggcgat
gccgtcgtcgtcgccgagcagtccggcatccatgcgggcattgggggtctcaacctcaac
gtcgaaaagcagacgacgctggtcggaggtctgatcaccagcgaggcgccttccgaccgc
aattcgatcgacaccggcacgctgacggtaaccgatatcgacacccattcgtcctggaag
gcggacacctacggcggctcgatcggcaccagcggcctctcgcttgcgccgccggtcaac
gctggggagaaggaaaccggcaaggcctattcggccatcgggccgaacatcggcattgcc
atcaccgacccggaacaccaaacgcaggatctcagcacgatccgccgggacacggaaaac
accaacacttcgctgcccggcttgccggacctgcagaacatcctgcgcgaccagtacagg
acccaggcggatcttcaagccgctcagaagactatggcgggactcgtagcgaccatcgcc
aatgagtttgctgatcaggctgacactccggaagaacttgctatttggggtgagagtgga
cccggacgagcattgctacatgccattggcgctggcatccttggtggggtcaatgattgg
gaaggcgccctgagaggtgcgcttggtggagcaacgtcgacattgcttgcttcagcgatc
gacaagcttgtcagcggcatgctcaagggcacaaaatacgaaggaacgctggaaggccag
cagcttgctacgctgattggccaaagcctcgccgcggcggctggagctgtcggtggtggg
gaaggcgctgcttacggcgctgccaactaccagttcaacttcatgaacgataagcagtac
ttcaggctcaggagcatggagatggcctgcaaggccggcgttggcggtgcttgtgacatt
gcacaggagctgcagacactcgaccagatcaccactggactattggtgagcgcctgtacg
gcggatatcggttctgacgagtgtatcgcagcaagagtagagcttggcgcagccatccac
tcgatcggtgagcaagggctgggtttatcggatacagaacgaaggctgctggagggctat
tatgccgagctgcagtcccttcagagagatcccacgggcacaaaacagattctcgacgcg
atcgccgggatcgttctcagctctccacgcgcaaccgcagccctagccgaacttaacgcc
ggcggcggacgtttgtccaataccgggtcgggtgccggttgctcgtttgacggctcgacg
ttggttaagacagctggtggctttacggctatcagcgaaatccgcccggacgagacatta
gtgtggtcgcgtgacgagcaagggcgtgaaggctacaagctggtgcttgcaaagattcgt
gaggagcatgctcaaactgcctatttgactctaaaatccgaagcgaccggtcgacagcag
acaatcataaccacgacgaaccatccgttcttcgctgtcctatccggagggcgagcggtc
cccgtagcgctgcctgaaggtcagttttatagggggccaataaaagatggcgcctggatc
gctgcgggtgaccttcggtcgggtgagaagctgcttgacgccgatggaagctggagttca
gttgtcgacatccgcgtcgaagacaagccgctcaatgcgtataatttgacgatcgccgat
ttccacacctattttgtcaagcaggccggtaatgacgctcaggaaacagtctgggtacac
aatagttgtctgcctagcgtggaaaaggcagtaaattccaatatcgatcacgcagccaat
cgggcggtcgaaagaggcgttttcgaaagtgctgcagaggcacgcgctgcctacaagcag
ctctccgcggatatctccaaaaacggttggccaagcgggacaattaaggatcccagctat
accgatcgctacttggttcccattggaaataacggatacgcgtcttatcagcttgcgaag
aacggcaccgccaagttaaaaacaacattgattagaaggtga
DBGET
integrated database retrieval system
