Rhizobium indigoferae: U5G49_006076
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Entry
U5G49_006076 CDS
T09660
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rif
Rhizobium indigoferae
Pathway
rif03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U5G49_006076 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_006076 (ligD)
Enzymes [BR:
rif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U5G49_006076 (ligD)
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U5G49_006076 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WRW39041
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All DBs
Position
pRinCIP108029d:complement(840192..842837)
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AA seq
881 aa
AA seq
DB search
MASDKLSTYRSKRDFQKTAEPSGEKRLARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRDRGSRTNWLLIKHHDEFSVEENGAATLEEN
QTSVASGRTMEMIAAGKGRKPKPFMVEGGDVQADAVWDSNHGLAAEERKEDTGAGRKSKT
ATKVDLPDFIAPQLCQTLERPPAGTGWIHEIKFDGYRIQMRVLDGEATLKTRKGLDWTTK
YPEIAEAASTLPDAIIDGEICALDDNGVPDFAALQAALSEGKTGELVYFAFDLLYEGGED
VRSLPLVERKARLQSLLSDAGSDLRIRFVEHFETGGDAVLRSACKLSLEGIVSKEADAPY
QSGRTESWTKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYHGDHLVYVGRVGTGYGVKKVE
TLLPKLKSLETAKSPFTGIGAPKKEAEVTWLKPELVAEIEFAGWTADGIVRQAAFKGLRT
DKPAKEVKAERPAKPAQTDVPQPVAETKAMPVRRKGAKAEVMGVTISNPDKPLWPDANDG
KPVTKEELARYYEMVGSWLIEHIKGRPCSIIRTPDGIDGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGGVELHPWNCEPHQPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDELGLVSFCKTTGGKGLHVVTPLAVNKRKPLSWAQAKAFAHDVCQQMARDN
PELYLIKMTKSLRDGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPTILSKSSAWDDYCDGRRPLEQAIKHLGKGRVAV
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgataaactgtcgacttatcgatcgaagcgcgactttcaaaaaacggccgaa
ccgagcggcgaaaagcgcctcgcgcgcagcaaccgtcgtcgtttcgtcatccagaagcac
gacgcgacccgactgcattacgatttgcgcctcgaactcgacggcgtcttcaagtcttgg
gctgtcaccaaaggcccgtccctcgatccgcacgacaagcggctggccgtcgaagtggaa
gatcacccgctggactacggtgatttcgaaggcaccattccgaaaggccagtatggcggc
ggcactgtcatgctctgggatcgcggttattgggagccggaaggaaagaagagcccggag
caggcgctggcgaaaggcgatttcaaattcacgctggaaggcaaacgcctgcatggcagc
ttcgtgctggtgcgcatgcgcaacgaccgcgaccgtggcagccggacaaactggctgctg
atcaagcaccacgacgaattctcggtcgaggaaaacggcgcggccacacttgaggaaaac
cagacatcagttgcctctggccgtaccatggaaatgattgccgccggcaagggacgaaag
cccaagcccttcatggtcgagggcggcgacgttcaagccgatgccgtctgggacagcaat
cacggactggctgccgaagagcgaaaagaagacactggagctggtcggaagtcgaaaacg
gccacaaaggttgatctaccggatttcattgcgccacaactctgccagaccctggagcgt
ccgcccgccggcaccggctggattcacgagatcaagttcgacggctaccgtatccagatg
cgcgtgctggacggggaggcgacgctgaagaccaggaaagggctcgactggacgacaaaa
tatcccgagatcgccgaggcggcatcgacactgcccgatgcgatcatcgacggcgagatc
tgcgccctcgacgataatggcgttcctgatttcgcggccctgcaggcggccctttcggaa
ggcaagaccggcgaactcgtctatttcgcattcgaccttctctatgagggcggcgaggac
gtgcgatctctgccgctcgtcgagcgcaaggcgcggcttcaaagccttctgtccgacgcc
ggcagcgatctgcgcatccgtttcgtcgagcatttcgaaacgggcggtgatgcagttctc
cggtctgcctgcaagctctcactggaaggcatcgtctcgaaagaggccgatgcaccctat
caatccgggcgcaccgaaagctggacgaagtcgaaatgccgcgccggccacgaggtggtg
atcggcgcctatgccaagaccaacgggaaattccgatccctgctggtcggcgtctatcac
ggcgaccacctcgtctatgtcggccgcgtcggcacgggatatggcgtaaagaaagtggaa
acgctgcttccgaagttgaaatcgctcgagacggcgaaatcgcccttcaccggcatcggc
gcgccgaagaaggaggccgaggtcacgtggctgaagcccgagctcgtggcggaaatcgaa
ttcgcaggctggacggccgacggtattgtccggcaggcggccttcaaagggctgcgcacg
gacaagccggccaaggaggtcaaggccgaacggccggcgaaacccgcgcagacagacgtg
ccgcagccggtggcggagacgaaggccatgccggtccggcgaaagggcgccaaggctgag
gtcatgggcgtgacgatttccaacccggacaagccgctatggccggatgccaatgatggc
aaacccgtcaccaaggaggaactggcccgctactacgaaatggtcggttcctggctgatc
gagcacatcaagggacggccatgttccatcatccggacgcccgacggcatcgatggcgag
cagtttttccagcgccatgcgatgcccggcacctccaacctgcttgaactggtgaaggtc
ttcggcgacaaaaagccttatttgcagatcgaccgcgtcgaaggccttgctgccgtcgcg
cagatcggtggcgtcgagctgcatccctggaattgtgaaccgcatcagcctgaggtgccg
ggccgactcgtcttcgaccttgatccaggtccggacgtgccattctccgcggtcgtttcg
gcagctcgggaaatgcgggaccgtctcgacgagttgggcctggtcagtttttgcaagacg
actggcggcaagggtctgcacgttgtcactccgcttgcggtcaacaagcgcaagccgctt
tcgtgggcgcaagcgaaggcttttgcccacgatgtgtgccagcagatggcacgagacaat
cccgagctctatctgatcaagatgacgaagagcctgagggatggccggatcttcctcgat
tatctgcgcaatgaccggatggcgacggcagtggcacctttgtcgccccgtgcccggccg
ggtgccaccgtctcgatgccgttgacatggacacaggtcaaatcggatctcgacccgaag
cgcttcaccatccgcaccgtcccgaccatcctctcgaaatcatcggcctgggacgattat
tgcgatggccggcggccactggaacaagcgatcaagcatctcggcaaggggcgagttgcc
gtatga
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