Candidatus Riesia sp. GBBU: AOQ88_01220
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Entry
AOQ88_01220 CDS
T04782
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rig
Candidatus Riesia sp. GBBU
Pathway
rig03030
DNA replication
rig03430
Mismatch repair
rig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOQ88_01220 (dnaE)
03430 Mismatch repair
AOQ88_01220 (dnaE)
03440 Homologous recombination
AOQ88_01220 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rig03032
]
AOQ88_01220 (dnaE)
03400 DNA repair and recombination proteins [BR:
rig03400
]
AOQ88_01220 (dnaE)
Enzymes [BR:
rig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AOQ88_01220 (dnaE)
DNA replication proteins [BR:
rig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AOQ88_01220 (dnaE)
DNA repair and recombination proteins [BR:
rig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AOQ88_01220 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ARC54866
LinkDB
All DBs
Position
complement(263571..267092)
Genome browser
AA seq
1173 aa
AA seq
DB search
MKDPNFIHLNVHSDYSIKDGIIKIYDLIKRCIDLKIPSIAITDFTNLYGVIKFYQLAHKS
GIKPIIGADFYIESEYLKEKKNLITILSKNKFGYQNLILLISEAYKKGYDESGPTITKDL
LFSHKEGLLLILGGIHGEIGKLFLKDDVESAKNCIKFYQKNFYENYYLEISRINKFQEKK
YIFSLIDFSFETNTPIVAVNNVRFMYKKDFLAHEIRVAIHKGITLNEQKKYQEYTVNQYL
KTESEMIKLFSDLPEALKNSVEISKRCNVILEFKKYFLPKFPTKEVSESYVLEKMSKAGL
EKRLKLVLINTNEIEKKRLEYFHRLNYELNVIDKMGFSGYFLIVMEFIQWAKNNNIPVGP
GRGSGAGSLVLYSLEITDIDPIKFNLLFERFLNPERISMPDIDIDFCMEKRDKVIEHVSN
VYGRDSVSQIIAFGRMTARAVIRDVGRALNHPYSLVDKVAKLIPNVIGMTIDKAIQTKKK
LKKMFNEDEEIQDLLNISKNIEGIIKNEVKHAGGVVISPTKITDYSPIYCDENGDNILTQ
FDKDDIEKIGLVKFDFLGLRTLTVIQNSLNMINRERNKNRLNNIDLSLISLSDKRCFRSL
QLSNTTALFQLESYGVKDLIKKLHPDCFEDIVALIALFRPGPLQSGMVENFINRKHGREK
IYYPDSKWQHILLKPILKETYGIILYQEQVMKIAQIFSGYTLGEADLLRRAIGKKNKTEM
KKQRSTFKSGAISNGICESLSMKIFDLVEKFSNYGFNKSHSVAYAFISYQTLWLKTYYTE
EFMASVMSLDMDNTKKIVHLINECRSINLTILPPDINKSSYYFHVDEKRKIRYGMGAIKG
VGKNTIDSITDNRKYHGEYKNILDFYMRIDHKKLNKRVTEKLIFSGIFDSLYNNRKRLIL
NLEKLLKISQEYSHERISGQTNIFWRNKNFYDLEKIFFEDYYEFFPIPILEKEKETLGIY
LTNHPTRIYENEVKNCIDINNIKFIHTSYRKKFCTFFGVIIKKKLFETNKMEKTAIFTIE
DYSDSIEIILRNKELKKYKNLLKENNILIVYGEIVNYDFQKRKKIIAKYIKDLDEFRKKS
IKSIFIIMDFQKINEKIINKIYSVLSFFQEKIVPVYFYYNKKNNIYSLSLSDKWFVNPTN
TFIKEINDLSNTEQIKVKFNYNRNIDEYKLSGF
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatccaaactttatacatttaaacgtacacagtgactattctataaaagatgga
ataattaaaatatatgatttaattaaaagatgcattgatttaaaaattccttcaattgcg
ataacagactttacaaatttgtatggagtaataaaattttatcaactagcacataaatca
ggaattaaaccaattattggagcagatttttacatagaaagtgaatatttaaaagaaaaa
aaaaatttaataacgattttaagtaaaaataaatttggatatcaaaatctaattttactg
atttctgaagcatataagaaaggatacgatgaatcaggtcctacaataacgaaagactta
cttttctcacataaagagggcctattgttaatacttggaggaatccatggagaaatcgga
aaactttttttaaaagatgatgtagaatctgcaaaaaactgtataaagttttatcagaag
aatttctatgagaactattatttagaaatttctagaattaataaatttcaggaaaaaaaa
tatattttttccctaattgatttttctttcgaaacaaacactccgattgtagctgttaac
aatgttagatttatgtataaaaaagattttcttgctcatgaaattagggtcgcgatacat
aaaggaataacattgaatgaacagaaaaaatatcaagaatacactgtcaaccaatattta
aaaaccgaatctgaaatgatcaagttattctcagaccttcctgaagctttaaaaaatagc
gtagaaatttctaaacgctgtaatgtaattcttgaattcaagaagtattttcttccaaaa
tttcctacaaaagaagtttctgaaagttatgttcttgaaaaaatgtcaaaagctggactc
gaaaaaagattaaaactagttcttattaatacaaacgagattgaaaaaaaaagattagaa
tattttcataggttaaattatgaattgaatgtgattgataagatgggattttctggatat
tttttaatcgttatggagtttattcaatgggcaaaaaataataatattccagttgggcct
ggaagaggatcaggagcaggatcgttagttttatactctttagaaattacagacattgat
ccaatcaagttcaatttattatttgaaagatttctgaatcctgaaaggatctctatgcct
gatattgatatagatttctgtatggagaaaagggataaagttattgagcatgtttcaaat
gtatacggtagagattctgtttctcaaattattgctttcggaagaatgactgctagagca
gttattagagacgtaggaagagctctaaatcatccttatagtcttgttgataaagttgct
aaactaattccaaatgttattggaatgacaattgataaagcaatacaaacaaagaaaaaa
ttgaaaaaaatgtttaacgaagatgaagaaattcaagatttgttaaacatttcaaaaaat
atagaaggaattataaaaaacgaagtaaaacatgcaggtggagttgtaatttctccgaca
aagattacagattattcaccaatatactgtgatgaaaatggtgataatattctaacgcaa
tttgataaagatgatatagaaaaaataggattggtaaaatttgattttttaggactaaga
actttgaccgttattcaaaattctttaaatatgattaatagagaacgtaataaaaataga
ttaaacaatattgatttatctttaatttcgttgtcagataaaagatgttttcgaagctta
caattatcaaatacaacagcgttatttcaactagaatcatatggcgtcaaggatttaata
aaaaaattacatcccgattgctttgaagatatagttgctttaatagctctttttagacca
ggtccattgcaatcaggtatggtagagaattttattaatagaaaacatggaagagaaaag
atttattatccggacagtaaatggcaacatatcttattaaaaccgattctaaaagaaact
tatggaataattctgtatcaagaacaggttatgaaaatagcacaaattttttcaggatat
actttaggagaagcagatctcttaagaagagcaataggtaaaaagaataaaacagagatg
aagaaacaaagatcaactttcaaatctggagcaataagtaatggaatatgtgaatctctt
tcaatgaaaatatttgatttagtggaaaagttctctaattatggatttaataaatctcat
tctgtagcttatgcttttatttcataccaaacattatggttgaaaacttattatacagaa
gagtttatggcttctgttatgagccttgatatggataacacaaaaaaaatagttcatttg
ataaatgaatgcagaagtattaatttaaccattcttccacctgatataaataaaagttca
tattattttcatgtagacgaaaaaagaaaaatacgatatggaatgggggctattaaggga
gttggaaaaaatacaatagactctataacagataatagaaaatatcatggagaatataaa
aatatattagatttctatatgcgtatagatcataaaaaacttaataaaagagttactgaa
aaactaattttttctgggatatttgattccttatataacaataggaaaagattaattcta
aatttagaaaaattacttaaaatctctcaagaatattctcacgaaagaatatctggacaa
acaaatattttctggagaaacaaaaacttttatgatttagagaaaattttttttgaagat
tactatgaattttttccaataccaattttggaaaaagaaaaggaaacccttggaatatat
ttaacaaatcatccaactagaatatatgagaatgaagttaaaaattgtatagatataaac
aatattaaatttattcacacttcttatagaaagaagttttgtacattttttggtgtaatc
ataaagaagaaattatttgaaaccaataaaatggaaaaaacagcaatcttcacaatagaa
gattattcagattctatagaaataattttacgaaataaagagttgaaaaaatataaaaat
ttactgaaagaaaacaatattttaatagtttacggagaaatagttaattatgattttcaa
aaaagaaaaaaaattatagctaaatatataaaagatcttgatgaatttagaaaaaaatct
atcaaaagtatatttataattatggattttcagaaaataaatgaaaagattattaataaa
atctattcggtattatcgttttttcaagaaaaaattgttccagtgtatttctattataat
aaaaaaaataatatttactcactatcacttagtgataaatggtttgtaaatcctacaaat
acttttattaaagaaataaacgatctatctaacacagaacaaataaaagtaaaattcaac
tacaacaggaatattgatgaatataaactttctggattttga
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