Candidatus Riesia sp. GBBU: AOQ88_01400
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Entry
AOQ88_01400 CDS
T04782
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rig
Candidatus Riesia sp. GBBU
Pathway
rig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOQ88_01400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rig03019
]
AOQ88_01400
03009 Ribosome biogenesis [BR:
rig03009
]
AOQ88_01400
Enzymes [BR:
rig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AOQ88_01400
Messenger RNA biogenesis [BR:
rig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOQ88_01400
Ribosome biogenesis [BR:
rig03009
]
Prokaryotic type
rRNA processing factors
AOQ88_01400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5529
Motif
Other DBs
NCBI-ProteinID:
ARC54899
UniProt:
A0A1V0HQ10
LinkDB
All DBs
Position
complement(306340..308292)
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AA seq
650 aa
AA seq
DB search
MKKMLINAIQQEELRVAIIDGRYLCDLDVENVKNEQKKSNIYKGRIVKIEPSLNAVFVDY
GSRKHGFLPVKEISDEYFFFKRSSKENLSIKEVLKEGQEIIIQVDKDERGNKGAALTTFI
SLAGSYLVLMPNNPKIEGISRKILGEDRIELKEIISSLEVPKEMGLIVRTAGLGKSVKIL
QRDLQYRINHWKAIKRSAERNSAPFLIHQESNVIIRAFRDLIQEDIEEIIIDKSEVVILA
RNYIEEIGLSGFSKRIKFYNKKIPLFSYYGIESQIESALKREVRLPSGGSLVIDSTEALT
AIDINSSRSTTGVDIEETAFNTNLEAVDEISRQLKIRDLGGLIVIDFIDMSSTSHIKEIE
NHFKDKTKNDRARIQIGKISRFGLLEMSRQRLSSPLYKSICCICPRCKGEGIVRNNSSIS
LSILRTIEEEISREDIIEIHVVVPIPIASYLLNEKRHFVNEMEKRKKNLRIVIIPNEKIK
SPNYNFIKILKKEKNLSFKKKFFAYKHHKKEIFKKNEKLMINNYFVKSILRQKLQKKSDT
LSKEGSFSRKRISKNIFNQALVLLKDFYKKFYILLKNGEKNCKYSKINQDRYKSSNYLNR
RKLKTFDVDFLEHDYSEIEKNKEKVKKDKKNIFVATYKKQSTSCKSKKKI
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatgttaattaatgcaatacaacaggaagagctcagagtagctattatagat
ggaagatatctttgtgatttagatgtagaaaacgtaaaaaatgagcaaaaaaaatcaaat
atttataaaggtagaatagttaaaatcgaaccaagtttaaatgcagtatttgttgattat
ggatctagaaaacatggatttcttccagtcaaagaaatttcagatgaatatttcttcttt
aaaagaagtagcaaagaaaacttgagtataaaagaagttttgaaagaaggtcaggaaata
atcatacaggttgataaggatgagagaggtaataaaggggctgcattaactacttttata
agtttggcaggaagttatcttgtattaatgccaaataatcctaaaatagaaggaatatct
agaaaaatattgggagaagacaggatagaactaaaggagatcatatcttctttagaagtc
ccgaaagaaatgggactaatagtcagaacagcaggattaggaaaatctgtaaaaatttta
caaagagatctgcaatatagaataaatcattggaaagcaataaaaagatctgctgaaaga
aattctgctccttttctaatacatcaagaaagcaatgtaatcataagagctttcagagat
cttattcaggaagatatagaagaaattattatagataagtcagaagttgtaatattagcg
cgtaactatatagaagaaattggattaagtggattttctaaaagaattaaattttataat
aaaaagatccctttattcagctattatgggatcgaatcacaaattgaatctgcgttaaaa
agagaagttagactcccgtctggaggatctttagtaattgattcaactgaagcattaaca
gcgattgatataaactcttctcgctcaactactggagtagatatagaagaaacagctttt
aatactaacttagaagcagtagatgaaatatctcgtcaacttaaaatcagagatctagga
ggattgattgtaatagatttcatagatatgagctcgacatctcatataaaagaaatagaa
aatcattttaaagataagactaaaaatgatcgtgctagaatccaaattggaaaaatatct
cgttttggattacttgaaatgtctagacagagacttagctctccactttataaatctatt
tgttgtatttgtcctagatgcaaaggagaaggaatagttagaaataactcatctatttcg
ttgtcaattctaagaactatagaagaagaaatttctagagaagatataatagaaatacat
gttgtagtacctattccaattgcttcttatttattaaatgaaaaaagacattttgtaaat
gaaatggaaaaaagaaagaagaatttacgaattgtcataattcctaatgagaaaataaaa
tcaccaaattataactttataaaaattttaaaaaaagaaaaaaatctttctttcaaaaaa
aaattttttgcatataaacatcataaaaaagaaatttttaagaaaaatgaaaaattaatg
ataaacaattattttgtaaagtctatacttagacagaaactacaaaaaaaaagtgatact
ttaagtaaagaaggatctttttctagaaaaagaatttcaaagaatatattcaatcaagca
ttagttcttctaaaagatttttataaaaagttttacatactacttaaaaatggagaaaaa
aattgtaaatattcaaaaataaatcaagacagatataaaagctcaaactatcttaacaga
agaaaattgaaaacatttgatgtggatttcttagaacatgattattcagaaattgaaaaa
aataaagagaaagtaaaaaaagataaaaaaaatatctttgttgcaacttataaaaaacaa
tctacttcatgtaaatcaaaaaaaaagatataa
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