Candidatus Riesia sp. GBBU: AOQ88_01460
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Entry
AOQ88_01460 CDS
T04782
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rig
Candidatus Riesia sp. GBBU
Pathway
rig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOQ88_01460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rig03021
]
AOQ88_01460
03400 DNA repair and recombination proteins [BR:
rig03400
]
AOQ88_01460
Enzymes [BR:
rig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOQ88_01460
Transcription machinery [BR:
rig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOQ88_01460
DNA repair and recombination proteins [BR:
rig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOQ88_01460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ARC54911
UniProt:
A0A1V0HQ96
LinkDB
All DBs
Position
complement(318123..322331)
Genome browser
AA seq
1402 aa
AA seq
DB search
MKDLIKFLKSRNKKEEFSSIKISLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDIPLRDIERVLYFESYIVTQEGVTNLEVGQVLTEDQYLKSLEEFGDEFEVKM
GAEAIQYLLKKIDMKRKCKLLKKELIKTQSETKKKKLTKRIKLLESFIQSENRPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIIRNEKRMLQ
EAVDALLDNGRRGRVITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKRMALELFKPFIYGKLESRGLANTIKSAKKMVEREESIVWDILDEVVKDHP
VMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAKLES
RSLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRECVNVKGEGMILSDPKEADRLYQIG
LVSLNAKIKVRIKEEILKDGVIRKRTKLINTTIGRAILWMIVPKGIPYDLINTTLGKIEI
SRMLNTCYRLLGLKSTVKFADQIMYTGFFYSAKSGSSVGIDDLVIPKRKSEIILKAEKEV
AEIQDQFHSGLVTAGERYNKVIDIWASANEQIAKEMMKEISVEVKQNRKNKYEKQTSSNS
IFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVAQDLVIIEEDCKTKEGIIMTPVIEGGDIKEPLRERVLG
RVAAENILIPGTQEVLISRNTLLDEEKCDRLEMNSIDVIKVRSVVCCETNFGVCSNCYGR
DLARGNLIKNGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSASESNIQIRSHGKIKLV
NAKFVQIKKNHSVITSRNAELIVTDEFNRTKESYKIPYGAHLIKDNEEYANGGEIVAYWD
PHTVPIISEVSGTIQFLDMIDGQSIIRQTDELTGLSSLVVIDTADRTTGSKDLRPSLRII
DEEGKNIFIPFTDTPAQYFLPGKSIVQLEDGDFVKSGDILARIPQESVGTKDITGGLPRV
ADLFEARIPKDPAILAEISGVVSFGKETKGKRRLIINSKNKKSHEEMIPKWRNLNVFEGE
KVEKGDVISDGPESPHDILRLRGENAVTRYITNEVQEVYRLQGVKINDKHIEVIIRQMLR
KATIINPGDSEFLSGEQVEYSRIRIVNKNLNSSGKKIASFSRNLLGITKASLSTESFISA
ASFQETTRVLTESAVAGKIDELRGLKENVIVGRLIPAGTGYAYHKEKEKYKLNRQLSLSK
EDKNEKTADNFTELLNVTNKEN
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttaataaagtttttaaaatctagaaataaaaaagaagagttcagttcaata
aagatttctctgtcttctccagatatgattagatcttggtcttttggagaagtaaaaaaa
ccagaaaccattaattatagaacttttaaacctgaaagagatggtttgttttgcgctcgt
atatttggcccaataaaggactatgaatgtttatgtggaaagtacaagagactaaaacat
cgtggagttatttgtgagaaatgtggtgttgaggttacacaaacaaaagtaagacgagaa
aggatgggacatatagaattagcatcacctacggcacatatatggtttttaaagtcttta
ccatctaggattggattactattagatatacctttaagagatattgaaagagttttatat
tttgaatcatacatagttacacaagaaggagtcactaacttagaagttggacaagttcta
acagaagatcaatatctaaaatcattagaagaatttggagacgaatttgaagtaaagatg
ggtgcagaagcaatacagtatttattaaaaaaaatagatatgaaaagaaaatgtaaactt
cttaaaaaagagttaattaaaacccaatcagaaacaaagaagaaaaaactaactaaaaga
ataaaattattagaatcttttatacaatcagaaaatagaccagaatggatgattctaaac
gttttaccagtacttcctcctgatttgagacctttagtgccactagatggaggaagattt
gctacttcagatctaaatgatttatacagaagagttattaatagaaataatagactaaaa
agattgttggatttatctgctccagatataattataagaaatgaaaaaagaatgcttcag
gaagcagtagatgctcttctagataatggaagaagaggaagggtaataacaggttcgaat
aaaagacctctaaaatcactagcagatatgattaaaggaaaacaaggaagatttagacaa
aacctcttaggaaaaagagttgactattctggaagatctgttatcacagttggaccatat
ttaagacttcaccaatgtgggctgccgaaaagaatggctttggaattgtttaaaccattt
atatatggaaaattagaatctagaggattagctaatacaattaagtcagctaaaaaaatg
gtagaacgagaagaatctatagtttgggacatattggacgaggttgttaaagatcaccct
gttatgttgaatagagctcctacattgcatagattaggaatacaagcttttgagccaatt
ctagtagaaggtaaagcaattcaattacatcctttagtctgtgctgcatataacgcagac
tttgacggagaccaaatggcagtgcatgttcctcttacaatagaagcaaaactagaatct
agatctcttatgatgtctacaaataatatactttctccagctagtggagatccaattata
gttccatcacaagatgttgtactaggcttatactatatgacaagagaatgtgttaatgtt
aaaggagaaggaatgatattgtcagatccgaaagaagcagatcgtttatatcagattgga
ttggtttcattgaatgctaaaataaaggttaggattaaagaagaaatattaaaagacggt
gttattagaaaaagaactaaattaattaatactacaattgggagagcaatactttggatg
atagtcccaaaaggaattccttatgatctaataaacacaacattaggaaaaatagaaatc
tctagaatgcttaatacatgctatagacttttaggattaaagtctacagtaaaattcgca
gatcaaattatgtatacaggatttttctattctgctaagtctggatcgtcagttggaata
gatgatttagtaatacctaagaggaaatctgaaataatcttaaaagcggaaaaagaagtt
gcagaaattcaagatcagtttcattctggacttgtaacagctggagaaagatacaataaa
gttattgatatatgggcatcagcaaacgagcaaatagcaaaggaaatgatgaaagaaata
tcagttgaggttaaacaaaatagaaaaaataaatatgaaaaacaaacatcttctaatagt
atatttatgatggctgattcaggtgctagaggatctgcagcacaaattagacaacttgca
ggaatgagaggtttgatggcgaaaccagatggttctataatagaaactccaataaccgca
aattttagagaaggattaaatgttttacaatatttcatatctacgcatggagcaagaaaa
ggattagctgacacagcattgaagacagctaattctggatatttgactcgtagattagta
gacgttgcccaggatttagtcataatagaagaagattgtaaaaccaaagaagggataata
atgactccagttatagaaggaggagatataaaagaacctttaagagaaagggtgttagga
agagttgcggcagaaaatatattaattcctggaacacaagaagttcttatatctagaaat
actttactagatgaagaaaaatgtgatagattggagatgaattctatagatgttataaaa
gtaagatcagtagtttgttgtgaaactaactttggagtttgttcgaattgttatggaaga
gatttagcaagaggaaatttaattaaaaatggagaagcaattggagtaatagcagcccaa
tctattggtgaaccaggcactcaacttactatgagaacttttcatataggtggtgcggct
tctagatctgcatctgagtctaatatacagataagaagtcatggaaaaattaaattagtt
aacgctaagtttgtacaaataaaaaagaaccattcagtgataacttctagaaacgcagaa
ctaattgtaacagatgagtttaatagaactaaagaaagttataaaataccatacggagca
catttaataaaagataacgaagaatacgctaatggtggagaaatagtggcttattgggac
cctcatacagttcctattattagcgaggtatcaggaactatacaatttttagatatgata
gatggacaatctataataagacaaacagatgaattaacaggattatcttctttagtagta
atagatacagcagatagaacaacaggtagtaaagacttaaggccgtctttaagaattatt
gatgaagaaggtaaaaatatttttataccttttacagatactccagcccagtatttctta
ccaggaaaatcaattgtacagttagaagacggcgattttgtaaaaagcggagatattcta
gctagaattccgcaagaatctgttggaactaaggatattacaggaggattaccaagagtg
gctgatttgtttgaagcaaggattccaaaagatccagctattttagcagaaataagtgga
gttgtttcatttggaaaagaaacaaaaggaaaacgtagattgattattaatagtaaaaat
aaaaaatcacatgaagaaatgattcctaaatggagaaacttaaatgtttttgaaggagaa
aaagttgaaaaaggagatgtaatttctgacggtccagaatctccacacgatatcttaaga
ttaagaggagaaaatgctgtgactagatatataacaaatgaagttcaagaggtttacaga
cttcaaggagttaaaataaatgacaaacatattgaagtaattattaggcaaatgttaaga
aaagcaacaataataaatccaggagactctgaatttctatcaggcgagcaagtagaatat
tcaagaattagaattgttaacaaaaacctgaatagctcaggaaagaaaattgcttctttt
agtagaaaccttttaggaattacgaaagcttcattatctacagaatcttttatatcagct
gcttcttttcaagaaactactagggttttaacagaatcagcagtagcaggtaaaatagat
gaattaagaggtttaaaagaaaacgtaattgttggaagattgattcctgctggtactgga
tatgcgtatcataaagaaaaagaaaaatataaattgaaccgtcaactttctttatctaaa
gaagataaaaatgaaaaaactgcagataacttcacagaattattaaatgttacaaataaa
gaaaactaa
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