Candidatus Riesia sp. GBBU: AOQ88_01565
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Entry
AOQ88_01565 CDS
T04782
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rig
Candidatus Riesia sp. GBBU
Pathway
rig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOQ88_01565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rig03021
]
AOQ88_01565
03400 DNA repair and recombination proteins [BR:
rig03400
]
AOQ88_01565
Enzymes [BR:
rig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOQ88_01565
Transcription machinery [BR:
rig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOQ88_01565
DNA repair and recombination proteins [BR:
rig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOQ88_01565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ARC54928
LinkDB
All DBs
Position
complement(338787..339773)
Genome browser
AA seq
328 aa
AA seq
DB search
MDFKREFLKPRLVNIKQIAQNHAKITLEPLERGFGHTLGNALRRVLLSSMPGYAVTDVEI
EGILHEYSTKDGVKEDIIEIILNLKELSVRLNGKDETILTLKKSGIGPVTASDIESREDV
EIVYPEHVICNLTCEKSDISMKIRVQKGRGYSPASSRINSEDVRQVGRLLIDACYSPIER
IAYNVEATRVEKRTDLDKLIIEIETNGTINPEEAIHKAASILIEQLESFVCLRDTEKKEI
KEEKPEFDPILLSSVDDLELTVRSANCLKAESIHYIGDLVQRTEVELLKTPNLGKKSLTE
IKDVLASKGLSLGTKIKNWPPKDLEKIL
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaaagagaatttcttaaacctcgtctagttaatatcaaacaaattgcgcaa
aatcatgctaaaataacattagaacctttagaaagaggatttggtcacactttgggaaat
gcattacgtagagttcttctgtcatcaatgccaggatacgctgtgactgatgtagaaata
gaaggaatacttcatgagtatagtacaaaagatggtgtaaaagaggatataatagagata
attttaaatttaaaggaattatcagttaggcttaatggaaaagacgaaactatactaact
ttgaagaagtctggaataggtccagtaactgcttcagatatagagtctagagaagatgtt
gaaattgtttatccagaacatgtaatttgtaatcttacatgtgaaaaatctgacattagt
atgaagataagggtacagaaaggaagaggatattctccagcttctagtagaattaattct
gaagatgttagacaagttggacgattattaatcgatgcatgttatagtccaatagaaaga
attgcatataatgttgaagccactagagtagaaaaaagaaccgacttagataaattgatt
atagaaatagagacaaatggtactattaacccagaagaggcaatacataaagctgcgtct
attttaatagaacagttagagtcgtttgtatgcttaagagacacagaaaaaaaagaaatt
aaagaagaaaaaccagagtttgatcctatattgttatcatcagtggatgatttagagcta
actgttcgttcagcaaattgtctcaaagctgaatctatacactatataggggatcttgta
cagagaactgaagtagaattactaaaaactccaaatttaggcaaaaagtctcttacagaa
attaaagatgttttagcctcgaaaggattatctcttggcacaaaaataaaaaattggccg
cctaaagatctagaaaaaatcttgtaa
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