Candidatus Riesia sp. GBBU: AOQ88_02185
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Entry
AOQ88_02185 CDS
T04782
Name
(GenBank) RNA polymerase subunit sigma
KO
K03086
RNA polymerase primary sigma factor
Organism
rig
Candidatus Riesia sp. GBBU
Brite
KEGG Orthology (KO) [BR:
rig00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AOQ88_02185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rig03021
]
AOQ88_02185
Transcription machinery [BR:
rig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AOQ88_02185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TRI4_N
UBR1-like_wing
Motif
Other DBs
NCBI-ProteinID:
ARC55033
LinkDB
All DBs
Position
complement(457504..459327)
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AA seq
607 aa
AA seq
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MENKPKSQLKLLVTKGKEKGYLTYSEINDHLPNDIIDSDKIEDVLQMISDMGIQIMEEAP
NTEDFIFVESMNNSEEDAAEAAAHVLSIVENEVGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQDSISKYPKAIKHVLKQYKLVKKGKIKLSEIITGFFDIKKEEKTIKKI
NQKTSSVILEEIIQEEKQNEEETEESEIDPEIAKKKFLKLERQYEIFYKSIRKKNHNNKI
SNSELEKLSRTFKTFRLSPKKFNFLVKKIRSSMNMIKIQEKTIINILTKSYGVDKKNIIQ
YLLKKKNGKEIEKYVKKIIRKNKILKEEKEIEKSLKKLKNIEKETYLTIVSIKNINRRIS
IGETKAKLAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNHISRQILQETGREPSPEELSER
MLIPEEKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDVNLELPIDSATTENLRAATNS
VLSALTTREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEI
LRSFLED
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaacctaaatctcaactaaaactactagttacaaaaggaaaagaaaaaggt
tatttaacttattctgagataaatgatcatcttccgaatgatataattgattcagataaa
attgaggatgttcttcaaatgatcagtgacatgggaatacaaatcatggaagaagcgcca
aatacagaagattttatttttgttgaatcaatgaacaattcagaagaagatgccgctgaa
gctgctgctcatgttctatctattgttgaaaacgaagtaggtagaactacagatccagta
agaatgtatatgagagaaatgggaacagtagaattattaacaagagaaggtgaaatagat
atagcaaaaagaattgaagacggaattaatcaagtgcaagattcgatatctaaatatcct
aaagcaattaaacatgtattaaaacaatataaattagtaaaaaaaggaaaaatcaaatta
tctgaaataattactggattttttgatattaaaaaagaagaaaaaactataaaaaaaata
aatcaaaaaactagttctgtaattttagaagaaattatacaagaagagaaacaaaacgaa
gaagaaactgaagaaagcgaaattgatccagaaattgctaaaaaaaagtttctaaaatta
gaaagacaatatgaaattttttacaaaagtataagaaaaaaaaaccataataacaaaata
tctaattcagaattagaaaaattatcgagaacttttaaaacttttagattatctccaaaa
aaatttaactttttagttaaaaaaataagaagttccatgaatatgattaaaatacaagaa
aaaactatcataaatatacttactaaaagttatggagttgataaaaaaaatatcattcag
tatcttttaaagaaaaaaaatggaaaagaaatagaaaaatatgtaaaaaaaataattaga
aaaaataagattttaaaagaagaaaaagaaatagaaaaatctctaaaaaaattaaaaaat
atagaaaaagaaacatatttaactattgtaagtataaaaaatattaatagaagaatctct
attggagaaacaaaagcaaaattagccaaaaaagaaatggtggaagccaatttaagatta
gttatatcaattgctaaaaaatacactaacagaggtcttcaattcttagatttaatacaa
gaaggtaatataggtttaatgaaagctgtagataaattcgaatatagaagaggatataaa
ttttctacttacgcaacttggtggattcgtcaggcaattacaagatcaattgcagatcaa
gcaagaactattagaataccagttcatatgatagaaacaattaacaaacttaatcatatt
tctagacaaattcttcaagaaacaggcagagaaccatctccagaagagttgtcagaaaga
atgttaataccagaagaaaaaataagaaaagttttaaaaattgcaaaagaaccaatttca
atggaaacccctgtaggagatgatgaagattcacatttgggagatttcatagaagatgta
aatctagaacttcctatagattctgctactacagaaaatcttagagctgcaacaaactcc
gtactttcagcattaacaacaagagaggctaaagttctaagaatgagatttggaattgac
atgaacacagatcatacattagaagaagttggaaaacaatttgacgtaacaagagaaaga
ataagacaaatagaagcaaaagctttaagaaaacttcgtcatcctagtagatcagaaata
cttagaagttttcttgaagattaa
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