Rhizobium indicum: FFM53_003945
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Entry
FFM53_003945 CDS
T07009
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rii
Rhizobium indicum
Pathway
rii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FFM53_003945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rii03021
]
FFM53_003945 (rpoC)
03400 DNA repair and recombination proteins [BR:
rii03400
]
FFM53_003945 (rpoC)
Enzymes [BR:
rii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FFM53_003945 (rpoC)
Transcription machinery [BR:
rii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FFM53_003945 (rpoC)
DNA repair and recombination proteins [BR:
rii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FFM53_003945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QKK15594
LinkDB
All DBs
Position
complement(792374..796582)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDAKAKIVADTENL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDEKTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTQTGLTMTAIVDAGQVVASIGARILGRT
ALDDIDHPVTGERIVDAGRMILEPDVVEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
ILRNSDGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NIAKLSRGGDARFFLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDEMILEERRK
GTGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcttacggtgagatcaag
aagccggaaaccatcaactaccgtacgttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccacatctggttcctgaagtcg
ctgccatcacgcatttcgacgctgctcgacatgacgctgaaggatgtcgagcgcgtcctc
tacttcgaaaactacatcgtcaccgagccgggcctgaccgccctgaaggagcaccagctc
ctctcggaagaagagtacatgctcgctgtcgacgaatacggcgaagaccagttcaccgcg
atgatcggcgccgaggcgatctacgagatgctggcctcgatgaacctcgaaaagatcgct
ggcgacctgcgtgccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcgcttgaagatcgtcgagaacttcatggagtcgggcaaccgtccggaatggatgatc
atgaaggtcgttccggtcatcccgccggatctgcgtccgctggttccgctcgacggcggc
cgtttcgcgacgtcggatctgaacgatctctaccgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgtgcgcctggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatccgttgacgcgctgttcgacaacggccgtcgcggccgtgtcatcaccggc
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctatgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagcctgaggtctgggatatcctcgacgaggtcatccgcgag
catccggttctcttgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cctatcctggtcgaaggcaaggcgatccagctgcatccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgaccaataacatcttgcatccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctactatctgtcgatcctcaaccag
aacgagccgggcgaaggcatggccttctccgatctcggcgagctgcatcacgccctcgaa
agcaaggtcgtgacgctgcacaccaagatccgcggccgcttcaagtcggtcgacgaggat
ggcaagccttactcgaagatctatgagacgacgcctggccgtctgctcatcggcgaactg
ttgccgaagaacggcaaggtgcccttcgatatctgcaaccaggaaatgaccaagaagaac
atctcgaagatgatcgacacggtctatcgccattgcggccagaaggacacggtcattttc
tgcgaccgcatcatgcagctcggcttcgcccacgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggatgccaaggccaagatcgttgccgacaccgaaaacctg
gtgaaggaatacgagcagcagtacaatgacggcctcatcacccagggcgagaagtacaac
aaggttgtcgacgcctggggcaaggcgaccgaaaaggtcgccgaagagatgatggcgcgc
atcaaggcggtcgaattcgacgagaagaccggtcgccagaagccgatgaactcgatctac
atgatgagccactccggtgcccgcggttctccgaaccagatgcgccagctgggcggcatg
cgtggcctcatggccaagccgtctggcgaaatcatcgagaccccaatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacccacggcgcccgtaagggtctg
gcagacaccgccctgaagaccgccaactccggctacctgacccgccgtctcgtcgacgtc
gcgcaggattgcatcgtcacgcacgtcgattgcggaacgcagacaggcctcaccatgacc
gccatcgtcgatgccggccaggtggttgcctcgatcggcgcccgtatcctcggccgcacg
gcgctcgacgacatcgatcatccggtcacgggtgagcgcatcgtcgatgccggcaggatg
atcctcgagcccgacgtcgtcgaaatcgagaaggctggcatccagtcgatccgcatccgc
tcggcactgacctgcgaaatccagacgggcgtctgctcggtctgctacggccgcgacctc
gcgcgtggtacgccggtcaatatgggcgaagccgtcggcgtcatcgctgctcagtcgatc
ggcgagccgggcacccagctcaccatgcgtaccttccaccttggcggtacggcaaccgtg
gtcgaccagtcgttcctcgaagcctcgtacgaaggtacggtgcagatcaagaatcgcaac
atcctgcgcaactccgatggcaacctcgttgccatgggccgcaacatgaccgtccagatc
ttggacgaacgtggtgtcgagcggtcgtcgcagcgtgtggcctacggttcgaagctgcat
gtcgacgaaggcgacaaggtcaagcgcggccagcgcctggcggagtgggacccctacacc
cgtccgatgatgacggaagtggccggtaccgttcagtttgaagatctggtcgacggtctc
tccgttctggaagcgaccgacgaatcgaccggcatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgcggctcggacctcaagccggcgatcgtcatcaaggatgccagcggc
aatatcgccaagctttcccgtggtggtgacgcccgcttcttcctctcggtcgatgcgatc
ctgtcggtcgagccgggcacgaaggtctcccagggtgacgttctcgcccgttcgccgctc
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgagctgttcgaa
gcccgccgtccgaaggaccacgccatcatcgcagagatcgatggtacgatccgtctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtggaggctctggcctcctacctcgtcaacgagatccaggaagtctaccgcctgcagggc
gtcgtcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtggaa
atcaccgatgcaggcgactcgacctatatcgtcggcgacaatgtcgaccggatcgagctc
gaagacgtcaacgatcacctgatcgagcagggcaagaagccagcctacggcgatccggtt
cttctcggcatcaccaaggcatcgctgcagaccccgtccttcatctcggccgcgtccttc
caggaaacgaccaaggtgctgacggaagctgcaatcgccggcaagaccgacggtctgcag
ggtctgaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acccagatccgccgcatcgccacgtcgcgcgacgagatgatcctcgaagagcgccgcaag
ggcacgggtgctgccgttgccacgccgatgctgcaggacatggccgaaaaggctccggct
gcggaataa
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