Rhizobium indicum: FFM53_004315
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Entry
FFM53_004315 CDS
T07009
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rii
Rhizobium indicum
Pathway
rii03030
DNA replication
rii03430
Mismatch repair
rii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FFM53_004315 (dnaE)
03430 Mismatch repair
FFM53_004315 (dnaE)
03440 Homologous recombination
FFM53_004315 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rii03032
]
FFM53_004315 (dnaE)
03400 DNA repair and recombination proteins [BR:
rii03400
]
FFM53_004315 (dnaE)
Enzymes [BR:
rii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FFM53_004315 (dnaE)
DNA replication proteins [BR:
rii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FFM53_004315 (dnaE)
DNA repair and recombination proteins [BR:
rii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FFM53_004315 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
QKK15657
UniProt:
A0ABX6P9I4
LinkDB
All DBs
Position
complement(870300..873797)
Genome browser
AA seq
1165 aa
AA seq
DB search
MADTAKGSTGEATGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FVALEFSQKAMEDGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYER
LVDLVSRAYLGGESNQAVHISASWLEEAGTEGLIALSGALTGPVDVAIKEGHPAQAEVRL
LTLKRLFGDRLYVELQRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPI
LPRFTGATDDAEEAERAEASELRRQAVEGLDMRLATLGMSPGYEEKDYRERLDFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKLGIKVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRPF
ETGDNRIYYALAALKGVGESAVDHIVEVRGDKPFASVEDFCLRIDPRQVNRRVLESLIYA
GAFDCFDMDRAQLAAGLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLP
SERLLKEFQVLGFYLTAHPLDSYNHILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFVLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGHLNAKGDGLVSFIVIKEDGKREVEVALS
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggcaaagggttcaacgggtgaggcgaccggcggcacgccaggcttcatc
cacctgagggtccattccgcctattcgcttctcgagggcgccctgccactgaagaagatc
ctctacaaggcgaccggcgacagtcagccggcgattgcgattaccgacaccaacaatctg
ttcgtcgccctcgaattctcgcagaaggcgatggaagacggcctgcagccgatcatcggc
tgccaggtctcgatcgacatggaagatgggttggaaacggagaagcgcggcggccagcag
gcactggtcaagctgccgtcgatcgttcttctcgccgcgacggatgccggttatgaaagg
ctggtcgatctcgtcagtcgggcctatctcggcggcgagagcaaccaggccgttcatatc
agcgcctcctggctggaggaggcgggcacggaagggctgatcgcattgagcggcgccttg
accgggccggtcgacgtggcgatcaaggaaggccatcccgctcaggcggaagtccggctg
ctcacgctgaagcgtctcttcggcgacaggctttatgtcgagctgcagcggcacggcacc
tacgacaagcggcacgaacagaagattatcgggctcgcctatgcccacgacctaccgctg
gttgcgaccaatgaggctttctttccgacacgcgacgattacgacgcccatgatgcgctg
atggcggtcgcgcacaacgccatcgtctccgatgacagccgctttcgcctgacgccggat
cactatctgaagagccgggccgagatggtcaagctcttcgccgacctgccggaagcgctg
gaaaatacgatcgagatcgccacgcgctgctccttcgtgctgaagacgcgaaagccgatc
ctgccacgcttcaccggtgcgaccgatgatgccgaggaggccgaacgcgccgaggcgagc
gagctgcgccgccaggcggtcgaagggctggacatgcggcttgcaacgctcggcatgtcg
ccgggttacgaggaaaaggattatcgcgaacggcttgatttcgagctcagcgtcatcgag
cgcatgcgtttccccggctacttcctgatcgttgccgacttcatcaaatgggccaagcag
catgacattccggtcggtcccggccgtggttcgggcgccggttcgctggtcgcctatgcc
ttgacgatcaccgatgtcgatcccttgcgtttttcgctgctcttcgagcgcttcctcaat
ccggaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgcgaagag
gtgatccgctatgtccaggccaagtatggtcgcgagcaggtggcgcagatcatcactttc
ggttcgctgcaggcacgcgccgcccttcgcgacgtcggccgtgtgcttgagatgccctat
ggccaggtcgacaagatttgcaaactcgtgccgaacaatcccgccaatccgacgccgctg
tccaaggcgatcgaggaggagccgaagctgcaggaggaggcggcaaaggaaccggttgtc
gcgcggctgctcgatatcgcccagaagatcgaggggctttaccgccacgcctcgacccat
gccgccggtatcgtcatcggcgaccggccgctttccaagctggtgccgatgtatcgcgat
ccgcgctccgatatgccggtcacccagttcaacatgaaatgggtcgagcaggcgggcttg
gtcaaattcgacttcctcggcctgaagacgctgaccgtgctgaaggtcgcggtcgatttc
gtcgccaagctcggtatcaaggtcgatctcgcagccattcctctcgacgacaagaagacc
tacgagatgctgtcgcgcggcgagacggtcggcgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctctatcgtcccggcccgatggagaacatcccgacctacaatgcccgcaagcacggcgac
gaagagctggaatcgatccatccgatgatcgaccacctgctcaaggaaacccagggcgtc
atcgtctatcaggaacaggtgatgcagatcgcccaggtactatcaggctattcgctgggg
gaagccgaccttctgcgtcgcgccatgggtaagaagatcaaggctgagatggaccagcag
cgcgaacgcttcgtcgttggcgccgtcaagaatggcgtatcgaagccgcaggccgacaat
atcttcgaactgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgcc
tatgccatcgtctcttaccagacggcctacatgaaggcgcattatccggtcgaattcctc
gctgcctcgatgacgctcgacatgtccaacaccgaaaaggtcaatgatttccgccaggat
gccaagcgcctcggcatcgaggtgatcgcaccctcggtgcagacctccttccgccctttc
gagaccggcgacaaccgcatctattacgcgctcgccgcactcaagggcgttggcgaatcc
gccgtcgaccatatcgtcgaggtgcgtggcgacaagccctttgccagtgtcgaggatttc
tgcctgcgcatcgatccgcgtcaggtcaatcgtcgcgtgctcgaaagcctgatctatgcc
ggtgccttcgattgtttcgacatggaccgcgcccagctggcagccggcctcgaccgtgtt
ctcggttatgcccagcgcgcccaagagaacaagctgagcggccagtcagacattttcggc
agcacgctgacgtcggggcctgagaagatctccctgccgccgttctcgccctggctcccc
tccgagcggctgctcaaggaattccaagtgctgggcttttatctgacagcccacccgctc
gattcctacaaccacatcctgcagaagatgcgggtgcaaacctttgccgagttttccgcc
gccatcaaacagggcgcggccaatgcgcgccttgccggcaccgtcatctcgaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttttcggattcttcaggccag
ttcgaagcagtgctgttttcggaaatgctgaaccagtatcgcgatgtgctcgaatcggga
aaatctttcgtgctgaccgcgacgggcgaggagcggccggagggcatcgggctgcgcatc
cagacgatccagtcgctggaggaaaagtcgctgcagatgcagaaggcgctgcgcgtctat
gtccgcgattcaggaccgctgagaatggttgccggccatttgaacgccaagggcgatggc
ctggtttccttcatcgtcatcaaggaggatggcaaacgcgaagtggaagtggcgctgtcg
gagaaataccgcatcacgccggagattgccgccgcccttcgcgccgccccgggcgtcgtc
gacgtcgagcttgtctga
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