Rhizobium indicum: FFM53_021025
Help
Entry
FFM53_021025 CDS
T07009
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rii
Rhizobium indicum
Pathway
rii03420
Nucleotide excision repair
rii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFM53_021025
03430 Mismatch repair
FFM53_021025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rii03400
]
FFM53_021025
Enzymes [BR:
rii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFM53_021025
DNA repair and recombination proteins [BR:
rii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FFM53_021025
MMR (mismatch excision repair)
Other MMR factors
FFM53_021025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF4420
Motif
Other DBs
NCBI-ProteinID:
QKK18790
LinkDB
All DBs
Position
complement(4333421..4335901)
Genome browser
AA seq
826 aa
AA seq
DB search
MSNSFDDMPFFDEEPGEMARKPQPPAATAERAPAASGGIAARAMAARDGGKRPDYLAGLN
PEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMK
ERIALLVGGAVEGMPWLGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVIRLIKQIIQAE
GLDDKRWPAKQFAGMIDTWKNKGLGPADIPEGDARAFANGRGRDLYFAYQARLTTLNACD
FGDLLMHPIAIFRKNPDLLKEYHGRFRYILVDEYQDTNTAQYMWLRLLAQRSKGEPQNVC
CVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRL
GKTLFTDRSDPDDVKVQVHASWDSEEEARAIGEEIEQLQRGKHLLNDMAILVRASFQMRE
FEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVAQASDDLAFERIVNTPKRGLGDTT
VRALHDYARARDIPMLAAAADIIETDELKPKARKALFDVIQSFRRWQELLENTPHTELAE
QILEESGYTDMWKNDKSAEAPGRLENLKELIRSMESFESMRGFLEHVSLVMDAETNENLD
AVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRAKHRC
HIWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFA
NSYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIEGELVAKSTSSEPS
KFTLGDRVFHLKFGNGNITGIEGNKLTIEFDRAGQKRVLDGFVERV
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagtttcgacgatatgcccttcttcgacgaagagccgggcgagatggcgcgc
aagccgcagccgcctgccgcaaccgccgaaagggcgcccgccgccagtggcggcatcgcc
gcccgcgccatggcggctcgcgatggcggcaagcgaccggattatctcgccgggctgaac
cccgagcagaccgaagccgtcgaaacactggaaggccccgtcctcgtgctcgccggcgcc
ggcaccggcaagacgcgcgtgctgacgacccgcattgcccatatcctcaataccggccgc
gccttcccctcgcagatcctcgccgtcaccttcaccaacaaggctgcccgcgagatgaag
gagcgcatcgcgttgctcgtcggcggcgccgtcgaaggcatgccctggcttggcaccttc
cattcgatcggcgtcaaacttctgcgccgtcacggcgagcttgtcggcctgcgctccgat
ttcaccattctcgataccgacgatgtcatccgcctgatcaagcagatcatccaggccgaa
ggcctcgacgacaagcgctggccggccaagcagttcgccggcatgatcgacacctggaag
aacaagggtctcggccctgccgatatccccgagggcgacgcccgcgcgtttgccaatggc
cgcggccgcgatctttatttcgcctatcaggcgcgcctgacgacgctgaacgcctgcgat
ttcggcgacctgctgatgcatccgatcgcgatcttccgcaagaacccggatctcttgaag
gaatatcacggccgcttccgctacatcctcgtcgacgagtaccaggataccaataccgcc
cagtacatgtggctcaggcttctcgcccagcgctccaagggcgagccgcagaacgtctgc
tgcgtcggcgacgacgatcagtcgatctatggctggcgcggcgcagaggtcgacaatatc
ctgcgcttcgaaaaggatttccccggcgccaaggtcatcaagctcgagcgcaactaccgc
tcgaccgaacatatcctcggggccgccgcccatctgattgcccataatgagggccgcctc
ggcaagacgctgttcaccgaccgctccgatccagacgacgtcaaggtgcaggtccacgct
tcctgggattcggaggaggaagcccgcgccatcggcgaggagattgagcaactccagcgc
ggcaagcatctcttgaacgacatggcgatcctcgtgcgcgcctccttccagatgcgcgaa
ttcgaagaccgcttcgtcaccctcggcctcaactaccgcgtcatcggcggcccgcgcttc
tacgagcgcctcgagatccgcgatgccatggcctatttccgcctggtcgctcaagcctcc
gacgacctcgctttcgaacgcatcgtcaacaccccgaagcgcggcctcggcgatacgacg
gtgcgtgcgctgcacgactatgcccgtgcccgcgatatcccgatgcttgcggcagccgcc
gacatcatcgagaccgacgagctgaagccgaaggcgcgaaaggcgctcttcgacgtgatt
caatctttccgccgatggcaggaactacttgaaaacacacctcataccgaacttgccgag
cagatcctcgaagagtccggctataccgacatgtggaagaacgacaaaagcgccgaagcg
ccgggtcggctcgaaaacctcaaggaactgatccgctcgatggaaagcttcgagtcgatg
cgcggcttcctcgaacacgtctccctggtcatggatgccgagaccaacgagaacctcgat
gccgtctcgatcatgacgctgcactctgccaagggcctggaattcgacaccgtcttcctg
cccggctgggaggaaggcctcttcccgcaccagcgctcgctggatgagagcggccgcgcc
ggcctggaggaggaacgccgcctcgcctatgtcggcatcacccgcgccaagcaccgctgc
cacatctggttcgtctccaaccgtcgcatccatggcctctggcaatcgaccctgccctcg
cgtttcctcgacgaactgcccgaaacccatgtcgaggtcgccgaaatggagcagagctac
ggcgggtacggccgcggcggctacggccagtcccgcttcgacaaggccgaacccttcgcc
aactcctattccactcccggctggaaacgagcccaggccaacaagaccgacgccacacgc
gacaattggggcacccgctccggccacgccgtcgaacgcatcggctatggcgaaagcggc
ccgaaggggcgcacaatcgaaggcgagctggtggcgaaatcgacctcgtcggagccatcg
aaattcacgctcggcgatcgcgtgttccacctgaaattcggcaacggcaacatcaccggc
atcgaaggcaacaagctgacgatcgagttcgaccgggcgggacagaaacgggtgctggac
gggttcgtcgagcgcgtctga
DBGET
integrated database retrieval system
