KEGG   Rhizobium indicum: FFM53_021180
Entry
FFM53_021180      CDS       T07009                                 
Name
(GenBank) Ku protein
  KO
K10979  DNA end-binding protein Ku
Organism
rii  Rhizobium indicum
Pathway
rii03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FFM53_021180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rii03400]
    FFM53_021180
DNA repair and recombination proteins [BR:rii03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FFM53_021180
SSDB
Motif
Pfam: Ku
Other DBs
NCBI-ProteinID: QKK18817
LinkDB
Position
complement(4375343..4376251)
AA seq 302 aa
MPSGQRAQWKGFLKFGEVSCGVALYTAASTSDRITFNTINKATGNRVNRIFIDSETEDPV
PKEAQTKGFEIDNGQYIIIDPEEVSAAIPESNKTLEIEAFIPCSDVDDVYFDKPYYLTPD
KMGGDAFAALRDAMKKSMVAAIARTVLFRRMRTVLIRPHGKGLIASTLNYDYEVRSSEKA
FEEMPKLKIEGEMLDLAKHIISTKKGEFDPATFDDRYEAALADLVKAKLEGKSLPKPKKV
QVSKPNDLLAALRESAGMLKAAADNPKRTAANANTGTGRQRAARGAAAKSAASKAAPQRK
AS
NT seq 909 nt   +upstreamnt  +downstreamnt
atgccgtcaggacagcgtgcacagtggaaaggctttctgaagttcggtgaggtaagctgc
ggcgtcgctctctacacggcagcctcgactagcgaccgcatcaccttcaacaccatcaac
aaggccacgggcaatcgggtcaaccgcatcttcatagacagcgagaccgaggatccggtg
ccaaaggaagcccagaccaagggcttcgagatcgataacggccagtacatcatcatcgat
cctgaggaagtttccgccgcgatccctgagagcaacaagacgctcgagatcgaggcgttc
atcccctgctccgacgtcgacgacgtctacttcgacaagccctactacctcacgcccgac
aagatgggcggagacgcgttcgcggctctccgcgatgcgatgaagaagtcgatggtcgcg
gccatcgcccgcaccgtcctgttccgtcgaatgcgtacggtgctgatacggccgcacggc
aagggcctgatcgccagcacgctcaactacgattacgaggttcgttcctccgaaaaggct
ttcgaggaaatgcccaagctcaagatcgagggcgagatgctcgatctcgccaagcacatc
atcagcaccaagaagggcgagttcgatccggcgaccttcgatgaccgctacgaagccgcc
cttgcggacctggtgaaggcgaagctggaaggcaagtcgcttccaaagccgaagaaggtg
caggtctcgaagcccaacgatctgctggccgcgctccgcgagagcgcaggcatgttgaag
gccgctgcggacaacccgaaacgcactgccgccaacgctaacactggcactgggaggcag
cgcgccgcgcgcggggcggcagcgaagtccgccgcttcaaaggctgccccgcagcgcaaa
gccagctag

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