Rhizobium indicum: FFM53_032845
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Entry
FFM53_032845 CDS
T07009
Symbol
nifA
Name
(GenBank) nif-specific transcriptional activator NifA
KO
K02584
Nif-specific regulatory protein
Organism
rii
Rhizobium indicum
Pathway
rii02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FFM53_032845 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rii03000
]
FFM53_032845 (nifA)
Transcription factors [BR:
rii03000
]
Prokaryotic type
Helix-turn-helix
Other families
FFM53_032845 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
AAA
AAA_3
DUF3369
TIP49
GAF
AAA_30
DUF815
Motif
Other DBs
NCBI-ProteinID:
QKK21276
LinkDB
All DBs
Position
pPR12A203:213631..215184
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AA seq
517 aa
AA seq
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MKPETRLSVLYAVSKELISSFPLDNVLKAAMNALAEHLLLSDGGIVIHGAGGEPWINVRA
LIGHDVRSRPLTIEQADAIDRVLAGGEKHFGKNSIFLPVKANRKAIGALWIDFAQQSEAQ
DESLLTKIAVLIGLTCQRYRELCSDGGSVTEEQQAGQIPKIKPRPHTQHDKIDWIVGDSP
AIKKVLETTKIAAATNSAVLLRGETGTGKECFARAIHALSIRKSKPFIKLNCAALSETVL
ESELFGHEKGAFTGALLQRAGRFELANGGTLLLDEIGDVSPQFQAKLLRVLQEGEFERLG
GTKTLKVDVRVICATNKNLEVAVLRGEFRADLYYRINVVPIILPPLRLRDGDISLLAQVF
LEQFNKANDRNFEFAPSALDILSKCAFPGNVRELDNCVQKTATLASSNTIGSSDFACQQN
QCFSALLWKTDVDGIGNKTMHTLNPRDTMSSGLGPYAGTPSGATATMEAPGLTERDRLIN
AMVKAGWVQAKAARILGKTPRQVGYALRRFGIDVVKE
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
attaaaccagagacgcggctcagtgtactctacgccgtatccaaagaacttatctcttct
tttcctctagacaacgtgctgaaggctgccatgaatgcactcgccgagcatctgctattg
agcgatggcggaatcgtgattcacggcgccggaggagagccctggataaacgtgcgggct
ctcattgggcacgacgttcgctcacgtccacttacgattgaacaggcggacgcaatagat
cgtgtcctcgctggcggtgagaagcactttgggaaaaattccatctttctccccgttaag
gcaaaccggaaagcaatcggcgcattgtggattgatttcgcacagcaaagcgaagctcag
gacgaaagtcttctgacaaagattgccgtgctgatcggtttaacctgccagcgatatcgc
gaattgtgcagcgatggcggctcggtcaccgaggaacaacaagcaggacagattccgaaa
atcaagccgaggcctcacacccagcacgataagatcgactggatcgtcggggacagccct
gcgatcaagaaggttctcgaaaccaccaaaatcgcggccgcgacaaactccgcggtgctt
ttgagaggtgagaccggtactggcaaggagtgctttgccagagcaatacacgcgctgtcg
atacggaaaagcaagccatttattaagttgaattgcgccgcgctgtcggaaaccgttctg
gaatccgaattgtttggccatgagaaaggcgctttcactggcgctcttcttcaacgagct
ggacgtttcgaactggccaatggcggaacgctgttgcttgatgaaattggcgatgtatca
ccacaattccaggcgaagttattgcgcgtgttacaggaaggcgaattcgaacgtctcggc
ggaacgaagacattaaaagtagacgttcgagttatatgcgccaccaacaaaaaccttgaa
gtggccgtccttcgaggggagttcagagccgacctctattaccggatcaatgtggtgccc
atcattttgccgccacttcggctgcgcgacggagacatttcgcttctagcgcaagtgttc
ctcgagcaattcaacaaggcaaatgatcgaaattttgagttcgcgccgtcggcactagac
attttgtctaaatgcgcattccccggcaatgttcgcgagctggacaactgcgtacaaaag
accgccactctcgccagttcaaataccatcggttcatcggattttgcttgtcagcaaaac
caatgtttttcggcgctcctttggaaaaccgacgtcgacggtattggcaacaaaacgatg
cacactctcaacccgcgagacacaatgtcgagcggactgggcccctacgcaggcactccc
agcggtgccacagccacaatggaggcaccgggtctcactgagcgtgatcgactgatcaat
gcaatggtgaaggctggttgggtacaggccaaagcggctcgtatcctagggaaaacgccg
cgacaggtcggctatgcgttgcgccggtttggtatcgatgtggtgaaagagtga
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