Romboutsia ilealis: CRIB_2139
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Entry
CRIB_2139 CDS
T09982
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ril
Romboutsia ilealis
Pathway
ril03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ril00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRIB_2139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ril03019
]
CRIB_2139
03009 Ribosome biogenesis [BR:
ril03009
]
CRIB_2139
Enzymes [BR:
ril01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CRIB_2139
Messenger RNA biogenesis [BR:
ril03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CRIB_2139
Ribosome biogenesis [BR:
ril03009
]
Prokaryotic type
rRNA helicases
CRIB_2139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CED94742
UniProt:
A0A1V1I3A6
LinkDB
All DBs
Position
1:complement(2125810..2127435)
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AA seq
541 aa
AA seq
DB search
MNIIKFEDLPISDDIKRAVIEMGFEEPSPIKSQSIPVILSGKDVIGQAQTGTGKTAAFSI
PVLEMINPEEKNLQAVVLCPTRELAIQVSTEIRKIGKYMHGIKSLPVYGGQPIERQIKAL
KGGVQIVIGTPGRVIDHINRKTLKMDNVKMVILDEADEMLDMGFREDIEMILSKTPEERQ
TTFFSATMPKGILELTKKYQKNPEHIKVVRKELTVPNIKQYYIETRSANKLEVLSRLIDV
YNPKLSVVFCNTKKGADELVSDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVAT
DVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRNGISFSFVFGKEMRKMRDIER
YTKTKLVKHDIPSVADVEEKKVSTFFNQVKEVVEAGHLTKQIQWLENFCSESESEYGVVD
IAAALLKIALGDEEKQEIVEEPSRTRKEGRSKSRDTGASEGMIRLFINVGRNQRVQAKDI
LGAIAGEAGIPGKLVGTIDIYDKYTFVEVPKQNAKKVLEKMKDIKIKGNKINIERANRKK
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgaatataataaaatttgaagatttaccaataagtgatgatataaaaagagctgtaata
gaaatgggatttgaagaaccatctccgataaaatcacagtctatacctgtgattttatcg
gggaaagatgttatcggacaagctcaaacagggacggggaaaacagcagcattcagtata
ccagtattagaaatgattaatcctgaagagaaaaatttacaagcagtagtactttgtccg
actagagagcttgcaatacaagtttcaactgaaataagaaaaataggtaaatacatgcac
ggaataaaaagtttacctgtatacggtggacaaccaatagaaagacaaataaaagcatta
aagggtggagttcaaatcgtaataggtactccagggcgtgttatagaccatataaaccgt
aaaacattaaaaatggataatgtaaaaatggttatattagatgaagctgatgaaatgtta
gatatgggattcagggaagatatagagatgattctaagtaaaactccagaagaaagacaa
actactttcttctcagcgactatgccgaaaggtatattagagttaactaaaaaatatcaa
aagaacccagaacatataaaagttgttagaaaagaacttacagttcctaatataaagcaa
tactatatagaaacaagatcggctaacaaattagaagtattaagtagattaatagatgta
tacaaccctaaattatctgtagttttctgtaacacaaaaaagggtgcagatgaattagtt
agcgatttacaagctagaggatactttgcagatgcattacatggggacttaaagcaaact
caaagagatatagtaatggataaatttagaaatggaacaatagatatattagtagctaca
gatgttgcagctagaggtatagatgttgacgatgttgaagctgtatttaattatgattta
cctcaagatgaagagtactatgtacacagaataggtagaacaggtagagcaggtagaaat
ggtatatcattctcatttgtattcggaaaagaaatgagaaaaatgagagatatagaaaga
tatactaaaacaaaattagttaagcatgatataccatcagttgcagatgttgaagaaaag
aaggtaagtacattcttcaatcaagttaaagaagttgtagaagcaggtcatttaactaaa
caaatacaatggttagaaaacttctgctcagaatcggaatctgagtacggtgtagtagat
atagcagcagctcttttaaagatagctttaggagatgaagaaaaacaagaaatagttgaa
gaaccatcaagaactcgcaaagaaggtcgttctaagtcaagagatactggagctagcgaa
ggtatgataagactatttataaatgttggtagaaatcaaagagttcaagctaaggatata
ttaggggctatagctggagaagctggaatacctggtaaactagttggaacaatagatata
tatgataagtatactttcgttgaggtgcctaagcaaaatgctaaaaaagtattagaaaaa
atgaaagatataaagataaaaggaaataagataaatatagaaagagctaatagaaaaaag
aagtaa
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