Roseburia intestinalis M50/1: ROI_04170
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Entry
ROI_04170 CDS
T02598
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROI_04170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_04170
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROI_04170
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ROI_04170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SWI2_SNF2
Kinesin
AAA_22
SPESP1
Microtub_bd
UB2H
AAA_5
Motif
Other DBs
NCBI-ProteinID:
CBL07716
LinkDB
All DBs
Position
402944..404926
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AA seq
660 aa
AA seq
DB search
MDHFKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTL
IISHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDK
LRLSATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQY
TRNDMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHF
AVFPASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETG
FCSGIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTL
VDYGFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEHELLRTEQIIRPTGLLDPE
VVVRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDT
LERAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRA
ARNSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELISVSKK
VAKEEMNFKKAPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKGMLRDM
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggatcatttcaaattacattcaaaatacaaaccaaccggggatcagcctcatgcgatc
gaggagctggtaaaaggatttgaggagggcaaccagtttcagacgctgcttggagtgact
ggttccggtaagacttttacaatggcaaatgtgatccaggcattgaataagccgacactg
atcatatcgcataataaaacgctggcagcgcagttatacggggagatgaaagaatttttc
ccggagaatgcggtcgaatattttgtgtcatactatgattattaccagcccgaagcatat
gtgccgcagacggatacctatatcgcaaaggactccgcaatcaatgaggagatcgataaa
ctgcgtctttcagcgacggcggcgctggtggagcgcaaggatgtgatcgtggtggcatcg
gtttcctgtatttatggtttaggcagtccggaagattatcttggcatgatggtttcccta
agacccgggatggagaaggacagagatgacgtgatccgtgcgctggtcgatattcagtat
acgagaaatgatatggattttcaccgaggtacgttccgtgtgcggggagatacgttagag
attttcccggcaaactacggagatacggcggtccgtgtggaatttttcggggatgaaatc
gaccgtatcacggaggtggatgtgctgacaggggagatcaaatgcgagctggagcacttt
gcggtgttcccggcatcccattatgttgtgccgcaggagaaaatcttaaaggcatgcgat
gccatcgaacaggaactggatgagcgcatccggtattttaagggcgaggacaagctgctt
gaggcgcagcgcatttccgagcggacgaattttgatatcgagatgttaaaagaaacaggt
ttctgcagtggtattgaaaattattcgagacatcttgcaggacttccggcgggggcaacg
ccgcatacgctgatggattattttaaggatgattatctgatcatcgtggatgagtcccat
atcacgattccacagatccgcggcatgtatgcgggagaccagtcgagaaagtcaacgctg
gtggactacggattccgtctgccgtcggcgaaagacaaccggccgcttaattttgaggaa
tttgagagcaagatcgatcagatgctgttcgtatcggcaacaccgaatgtatatgaggac
gaacacgagctgcttaggacagaacagattatccgtccgaccggactgctcgatccggag
gtcgtggtgcgtccggtggagggacagatcgatgatctgatcggtgaggtcaataaggaa
atcaaagaccatcataaggtgctgattacgacactgacgaagaagatggcggaggatctg
acggattatatgcgtgagatcggtatccgcgtgaaatatcttcattcggatatcgatacg
ttagagcgtgcggagatcataagagatctgcggctggatgtatttgatgtgcttgtcggc
atcaacctgctccgggagggactggatattccggagatcacgctggtggcaattttagat
gcagataaagagggattcctgcggtcggagacgtcactgatacagacgatcgggcgtgct
gcgcgtaacagtgagggacacgttatcatgtatgcggacaagatcacagactccatgcgt
gttgcgatggaggagacgaagcgccgccgtgagatacagcaggcatacaatgaggaacac
ggcattacaccgacaacgatccagaaatctgtgcgggaactgatcagcgtgtcaaagaag
gtcgcaaaggaagaaatgaacttcaaaaaagccccggaatccatgaaccgggacgaactc
acaaagctgatcgcagacatccagaagaagatgcagaaagcggcagcagacttaaacttc
gaggctgctgcagagtaccgcgacaagatggtggagttaaagggcatgctgcgtgatatg
tga
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