Roseburia intestinalis M50/1: ROI_10370
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Entry
ROI_10370 CDS
T02598
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03030
DNA replication
rim03410
Base excision repair
rim03420
Nucleotide excision repair
rim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROI_10370
03410 Base excision repair
ROI_10370
03420 Nucleotide excision repair
ROI_10370
03440 Homologous recombination
ROI_10370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rim03032
]
ROI_10370
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_10370
Enzymes [BR:
rim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ROI_10370
DNA replication proteins [BR:
rim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ROI_10370
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
ROI_10370
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROI_10370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
XPG_I
HHH_2
Motif
Other DBs
NCBI-ProteinID:
CBL08236
LinkDB
All DBs
Position
1043415..1046195
Genome browser
AA seq
926 aa
AA seq
DB search
MGEKLVLIDGHSILNRAFFGIPDLTNSEGLHTNAVYGFLNIMFKILEEEQPDYLTVAFDV
SEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIAKQ
SEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGTEIEDYNAAEVKEKYQVTPIEFID
VKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDLAQ
MSKTLATIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRFAVETPKNQAA
EHFKLVEDRKEAEKVFAKLRGRSCGFYIVPGSKKKDSHEEEDGQMNLFAAGDMPGADSEP
SGIVESAENDAVEYCLGAAISTGEEETFFIKAGENLPAKQILSMFTASEAASYATLDLKP
QLAALGLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLG
KLTIEQAMKDAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLADM
ENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEFNINSPKQLGVILFEKLSMPYGK
KTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTSFNQT
ITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEK
LIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKK
EAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERV
AMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEE
EMHGAADLAVTLEIDAHVGKNWYEAK
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaaagctggtattgatagatggacacagtattttgaacagggcatttttcggg
atcccggatctgacgaattcggaaggactgcacacgaatgcagtctatggatttttgaat
attatgttcaagattttagaggaggagcagccggattatctgacggttgcatttgatgtg
tcagaaccgactttccgccataaaatgttcgcagaatacaaaggcacaagaaagccgatg
gcacaggaactgcgggaacaggttccgctcatgaaagaaatgttaaaagcgatgggagtc
actacgatcgaaaaaggcggctatgaggcggatgatctgcttggaaccattgcaaaacag
agtgaacaaaaagggctgacagtttcagtggtatccggtgaccgtgacctcttacagctt
gcaacggatcatattaagatccgtatcccgaaaacaaagcgcacaggcacggagatcgag
gattacaatgccgctgaggtaaaggaaaaatatcaggtgacaccaatcgagtttatcgat
gtcaaggcgctgatgggcgatacggcagacaatattcctggagtgccgggaatcggtgaa
aagacggcaacagcaatcattgcacagtatggaagtgttgaaaatgcctatgcacatgtg
gacgaattaaagccaccccgtgcaagcaaaaatttaaaagagtattatgacctggcacag
atgagtaagacgcttgcgacgatcgagatccatgcggacattgattatgatctttccggt
gcaaaacttaatggtatttccagcctgtacacggaggaggcatacctgctctgcaaacgg
ttagagtttaaaaatcttttgaatcgttttgcggtggaaactccaaaaaatcaggcggca
gaacattttaaacttgtggaagaccgtaaggaggcagagaaagtatttgcgaagcttcgt
ggcagaagctgtggtttttatattgttcccggaagcaaaaagaaagacagccacgaggaa
gaggacgggcagatgaatctgtttgcggcaggagatatgccgggggcagacagtgaaccg
tccggcatcgtagaaagtgcagaaaatgatgcagtggagtactgccttggagctgccatt
tcaactggagaggaagaaacctttttcataaaagcaggggaaaatcttccggcaaagcag
attctttccatgtttaccgcaagtgaggctgcgtcctatgcgacactggatttaaaaccg
cagcttgcggcgcttggcttactggagcgacaggtaaacggcaatattggcctgtcgaat
ctttttgacggtgtgcttgcagcatatcttctgaatccgctgaaaaatgagtatccatat
gaggatattgcaaaagactatatgggacagatgataccgtcaaaggcagatcttcttgga
aaactgaccatagagcaggcaatgaaagatgcaccggaagcatttttaaattatgtatgc
tatatggcatatgtggcacaggcatcgaaaaagacgctggagacagacttaaaggaagag
ggcatggatcatctgtttacggaaatcgagatgccgctcgtatttactcttgccgatatg
gaaaatgagggtatcattgcgtgcagggaggcgctcacggagtatggggacaaacttgca
gtgcgtatcgctgaactggaaaagcagatctatgaggaagcgggagaagagtttaatatc
aattctccaaaacagctcggagtgatcttatttgaaaaattgtccatgccgtatggaaag
aaaacaaagacgggttattccacggcggcggatgtgttagaccgccttgcaccggaatat
ccgatcgtttctgatattttagagtatcgtcagcttaccaagttaaagtccacttatgcg
gacggattggtcaactatatcgctaaagatggcaggatccacaccagttttaatcagacg
atcacagctaccgggcgtttaagcagcacggagccaaacctgcagaatatcccgatgagg
atcgaacttggcagactgatccgcaaggcatttgtgccaaaagagggatttgagtttatg
gatgccgattattcccagattgagcttcgtgttttagcacatatgtccggggatgaaaag
ctgatcgaggcataccgggaagcacaggatatccacaggatcacggcgtcccaggtattt
cacattccatttgatgaagtgacagacctgcagcgacgcaatgccaaggcagtcaatttc
gggattgtatatggaatcagttcgtttggactgagtcaggatttaagcatcagcaaaaaa
gaagctgcagagtatattgaacggtactttgaaacttatccaaagatcaagacgttttta
gatgggcttgtggcagaggcaaaagaaaaaggctatgtaacgacgatgtttggaagaaga
cgtccggtaccggaactttcaagcagcaattttatgcagcgttcctttggagaacgtgtt
gccatgaactcaccgattcagggaactgcggcagatatcatcaagatcgcaatgatacgc
gtgcatgacagactgttaaaagaaaatctaaagtcacgcctgatcttaaccgtgcatgat
gagcttttagtggagacggcgatcgaagaagaggatgcggttcgaaagattctcgaggaa
gagatgcatggagcggcagatcttgcggtcacacttgaaattgatgcacatgtcggcaaa
aattggtatgaggcaaaataa
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