Roseburia intestinalis M50/1: ROI_10910
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Entry
ROI_10910 CDS
T02598
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROI_10910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rim03019
]
ROI_10910
Messenger RNA biogenesis [BR:
rim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ROI_10910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
FCSD-flav_bind
Motif
Other DBs
NCBI-ProteinID:
CBL08284
LinkDB
All DBs
Position
1091935..1093689
Genome browser
AA seq
584 aa
AA seq
DB search
MKENKEAGISQNDSKKAERPERKKRTSVKENKKEKTSKLKIIPLGGLEQIGMNITAFEYE
DSIIVVDCGLSFPEDDMYGIDLVIPDVTYLKDNIDKVKGFFITHGHEDHIGAIPYVLRDI
NVPIYATKLTIGIIEHKLKEHNMLTKVKRKVVKYGQHINLGCFRVEFIRTNHSIQDAAAL
AIYSPAGIVVHTGDFKVDYTPVFGDAIDLQRFGEIGKKGVLALLCDSTNAERKGFTMSEK
TVGKTFDEIFADHKNTRIIIATFASNVDRVQQIINTAYKYGRKVVVEGRSMVNIIGIASE
LGYINIPDNTLIDIEELKNYPDEKTVMITTGSQGESMAALSRMACGMHKKVTIKPNDTIV
LSSNPIPGNEKAVSGIINELSMKGANVIFQDVHVSGHACQEEIKLIYSLVKPKYAVPVHG
EYRHLLAQARVAEELGINKDNIFILTSGDVLELDDEKAEVTGRVHVGDIMVDGLGVGDVG
NIVLRDRQHLAEDGIIIVVLTLESGSGQVLAGPDIVSRGFVYVRGAESLMEDAKHLLEDK
MQYCMDKGITDWGKIKNEIKDSLGDFVWKETKRRPMIMPIIMEV
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaggaggcaggaatcagccagaatgattcaaaaaaagcagagagaccg
gaacgaaaaaagagaaccagtgtaaaagagaacaaaaaagaaaaaacttcaaaacttaag
atcattccgcttggcggcttagagcagatcggaatgaatattactgcttttgagtacgaa
gacagcatcattgtagtggactgtggtctgtctttcccggaagatgacatgtatggaatc
gatcttgtcatcccggatgtgacttatctgaaagataatattgataaagtcaagggattt
ttcattacacacggacatgaggatcatatcggagcgattccgtatgtcttaagggacatc
aatgttccgatttatgcaacaaagcttaccatcggtatcattgaacataagttaaaagaa
cataatatgctgacaaaagtgaaacgcaaggtggtaaaatacggacagcatatcaattta
ggctgtttccgcgtggagttcatccgtacgaaccacagtattcaggatgcagcagcgctt
gccatttattcaccggcaggtatcgttgtgcacacaggtgacttcaaggtggattacaca
ccggtatttggagatgccatcgatttacagcgttttggtgagatcggtaaaaaaggtgta
cttgcactgttatgtgacagtaccaacgcagagcgcaagggatttaccatgtcagaaaag
acagtcggcaagacctttgatgagatctttgcagatcacaagaatacgaggatcatcatt
gcaacatttgcgtctaacgtagaccgtgtgcagcagatcattaatacagcttataaatac
ggcaggaaagttgtcgtggaaggacgcagtatggtgaatatcatcggcattgcgtcggag
cttggctacattaatattccggacaatacgctgatcgatattgaagaactgaaaaattat
ccggatgagaaaacggttatgatcacgaccggaagccagggagagtccatggcggcattg
tcccgtatggcatgtggcatgcataaaaaagttacgatcaaacctaacgatacgatcgtg
ctcagttccaacccgatcccgggaaatgaaaaggcagtttccggtattatcaatgagctt
tccatgaagggtgcaaacgttattttccaggacgtacatgtatccggtcatgcctgtcag
gaagagatcaaactgatctactccctggtaaaaccgaagtatgccgttccggtacatgga
gagtaccgtcatcttttggcacaggcgagagtggcagaagaacttggcatcaacaaggac
aatatctttatcctgacctctggtgatgtgcttgagttagatgacgaaaaagcagaagtg
acaggaagagtccatgtaggtgatatcatggtcgacggactcggtgtcggtgatgtcggc
aacatcgtactccgcgacagacagcatcttgcggaagatggaatcatcattgtcgttctg
acattagagagcggttccggacaggtgcttgcgggtccggatatcgtatcccgtggattt
gtctatgtcagaggtgcagagagtctgatggaggatgcaaagcatctgcttgaagataag
atgcagtattgtatggataaaggaatcaccgactggggcaagatcaaaaatgagatcaag
gattctttaggtgatttcgtgtggaaagagacaaagcgcagaccgatgatcatgccgatc
attatggaagtgtag
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