Roseburia intestinalis M50/1: ROI_11350
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Entry
ROI_11350 CDS
T02598
Name
(GenBank) Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
rim
Roseburia intestinalis M50/1
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rim03032
]
ROI_11350
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_11350
Enzymes [BR:
rim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
ROI_11350
DNA replication proteins [BR:
rim03032
]
Prokaryotic type
DNA Topoisomerases
ROI_11350
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ROI_11350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Rhv_5
Motif
Other DBs
NCBI-ProteinID:
CBL08316
LinkDB
All DBs
Position
1134506..1136743
Genome browser
AA seq
745 aa
AA seq
DB search
MNQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDK
PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMR
YTEARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTT
SIPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTGMGKI
KIRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVEAKKTSDIVDITNQSSK
EGIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHHVNFQ
YELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNI
NFKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKYEDILGS
RAAMAKVIIKELESFKKEYAKPRKTVIDNLEEAVVEEKKIEEMDVVFLMDRFGYAKTVDV
ATYERNKEAANTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDKGTPIDNLSN
YNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFDVAKRTTAATKLNEGDELIFV
QALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAIYLLNAEDVVN
IEVKGKEVALNRLRTAGRDTKGNKR
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaggaagaacagattatccgcaccgagtattcggaactgatgcagaaatcttat
attgattatgccatgagcgttatcatcgcgcgtgcacttccggacgtgagggacggttta
aaaccggtgcagcgaagaacgctttatgatatgtatgaacttggcatccgctatgacaag
ccgtaccgtaagtgtgcgcgtattgtcggtgatacgatgggtaaatatcatccgcacggt
gacagttccatctatgatgcgctcgtcgtgatggcgcaggatttcaaaaaaggactgccg
cttgtggatggacacggtaattttggttccatcgagggagatggcgccgcagcaatgcgt
tatactgaggcgcgtttacagaagattacacaggaagcctatttggcggacttagataaa
gatgtcgtaaactttgtcccgaactttgatgagacggaaaaagagccggaggtgctccct
gtcaaagttccaaacctgcttttaaacggtgcagagggaatcgccgtcggtatgacgacc
agtatcccgccgcacaattttggcgaggtcattgacggtgtgatcgcatatatgaaagac
ccggacatcaataccgagcagatgatgcagtatattccgggacctgattttccgactggt
ggtatcgttgcaaataaggatgaactgttagccgtttattcaaccggtatgggaaaaatc
aagatccgcggtaaagttgaagttgaaaagggaaaaggcggaaaagaccgtcttgtgatc
acagagatcccgtacaccatgatcggtgccaatatcggaaaattcttaaacgatatctac
agccttgttgaggcaaagaaaacttccgatatcgtggatatcacaaaccagtcctcaaaa
gagggaatacgcatcgttctggagctgaaaaagggtgcagatgtcgaaaatttaaaaaat
cttctctacaagaaaacaaaactggaagatacctttggcgttaacatgttagcggtagcg
gacggaaaaccggaaactatgggaatcgtgccgatcatccgccatcatgtgaatttccag
tatgagcttgcaacacgcaaatatcagacacttcttgcaaaagagcgcgacaaaaaggaa
attcaggaaggtctgatcaaggcaacggatgtcattgacctgatcattgagatcctgcgc
ggaagtaaaaatgtgaaggatgcgagagcctgcttaaccgacggtatcacagataacatc
aattttaaatcggaacagtcaaaacgagacgctgcaaaacttcgttttacggagagacag
actacggcgattcttgagatgcgtctgcagaaattaatcggactcgaactcgaagcactc
ttaaaagatcatgatgagaccttgaaaaatatcgcaaaatatgaggatattttgggaagc
cgcgcggctatggcgaaagtcatcatcaaagaattggagagttttaagaaagagtacgca
aaaccgagaaaaacggtgatcgataacttagaggaagcggtcgttgaggagaagaagatt
gaggagatggatgttgtattcttaatggatcgttttggatacgcaaaaaccgtggatgtc
gcaacgtatgagagaaataaggaggcggcaaacacagaaaaccgctatatcctgacctgc
aaaaatacggacaagatctgcatttttaccaataagggacagatgcatctgttaaaggtg
ttagatcttccttacggtaaattccgagacaagggaacgccgatcgataacctgagtaat
tataacagcagcgaggaaaattttgtctacatcacgaaccttgcggcaatcagccattcc
caggtgttgtttggaacaaaatctgctatgcttaaagtcgtggatggaagtgagtttgac
gttgcaaaacgaaccacggctgcgacaaaattaaatgagggcgatgagctgatctttgta
caggcacttgcacttgaggagacgctcgtgatgcagtccgaaaaagacttttttctacgg
atcgacatttccagtatcccggaaaagaaaaagggagcagttggtgtgcgcggcatgaaa
ttaggtgccggggacgcgcttgcggcgatctatcttctgaatgcggaagatgtagtaaat
attgaagtaaaaggcaaagaagtggcattaaaccgtctgcgcaccgcgggacgtgatacg
aagggaaacaaacgatga
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