Roseburia intestinalis M50/1: ROI_13410
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Entry
ROI_13410 CDS
T02598
Name
(GenBank) Endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ROI_13410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_13410
Enzymes [BR:
rim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
ROI_13410
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
ROI_13410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
CBL08497
LinkDB
All DBs
Position
1341464..1342291
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AA seq
275 aa
AA seq
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MLIGNHLSASKGYAAMGKAALALDANTFAFFTRNPRGGKAKEIDEKDVEKFLNFAKEHEF
GKIVAHAPYTMNLCAAKEDVRSFSKEMLLDDLKRMEYTPYNYYNFHPGSHVGQGAEKGIA
LIAEALNEALKPEQTTTVLLETMAGKGTEVGRTFEELREILDRVELNDKMGVCLDTCHVW
DGGYDIVNDLDDVLNEFDRVIGLDRLKAVHFNDSMNDCGSHKDRHAKIGEGKIGAEAMRR
VALHPLLEGRPFILETPNDDEGYRREIQMVREWTR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgttaataggaaatcatttatccgcatccaaaggatatgcggcgatgggaaaggcagcg
ctggcgttagatgccaatacctttgctttttttacaagaaatccgcgtggcggtaaggca
aaagaaatcgatgaaaaagatgtggaaaagtttttaaattttgcgaaggagcacgaattt
ggaaagattgttgcgcatgcgccatatacgatgaacctctgcgctgcaaaagaggatgtc
cgttctttttcaaaggaaatgctgcttgatgacttaaaacgcatggagtatacaccgtac
aattattataattttcatccgggttcccatgtgggacaaggggcggaaaaagggatcgca
ttgattgcggaagcattaaatgaagccttgaaaccggagcagacaacgaccgttttactt
gagacgatggcgggaaaaggaactgaggttggaagaacgtttgaggagttaagagaaatc
ttagaccgtgtggaattaaacgataaaatgggagtctgcctcgatacctgccatgtgtgg
gatggcggttatgacattgtaaacgaccttgacgatgtgttaaatgagtttgaccgtgtg
atcgggctcgaccggctgaaggcagttcactttaatgacagcatgaacgactgtggctcc
cacaaggaccgtcatgcgaagatcggtgagggaaagatcggtgcagaggcgatgcggcgc
gttgcattgcacccgcttttagaaggaagaccgtttatcttagagacaccgaacgatgat
gaggggtacagacgggagatacagatggtccgggagtggacgcggtaa
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