Roseburia intestinalis M50/1: ROI_16210
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Entry
ROI_16210 CDS
T02598
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03030
DNA replication
rim03430
Mismatch repair
rim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROI_16210
03430 Mismatch repair
ROI_16210
03440 Homologous recombination
ROI_16210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rim03032
]
ROI_16210
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_16210
Enzymes [BR:
rim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ROI_16210
DNA replication proteins [BR:
rim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ROI_16210
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ROI_16210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
Rv2179c-like
RNase_H_2
EcoR124_C
HEPN_Apea
Motif
Other DBs
NCBI-ProteinID:
CBL08734
LinkDB
All DBs
Position
1627246..1627953
Genome browser
AA seq
235 aa
AA seq
DB search
MQDYVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGAILCQNVKIPEKVTELTGITE
AMVQGGMEKEEAMRQFFEFIGEDIIVGQNVIFDYGFLKQWAVNHNMPLERNAVDTLKLAR
KFLPKEQKKDLESLCACFGVKRENAHRAFDDAYETWQVYEALRERYEEESAGDFMPKPLL
YKAKKQTPATARQIKYLREYAAHYQIKLPENFPEMTRSEASRLTDRLIATYGKMP
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgcaggattatgtagtcattgatcttgaaatgacaggtctgaatgcaaagaccgatcat
attttagaagtaggggcagtcagagtccggaaccatcaggcggtcgataaatttggtgca
attttatgccagaacgtaaagataccggaaaaagtgactgaacttaccgggatcacagag
gcgatggtgcagggcggcatggaaaaagaagaggcaatgcggcagttctttgaatttatc
ggagaggatatcatcgttgggcagaatgtgatttttgattatggatttttaaagcagtgg
gcggtaaatcataatatgccattggaacggaatgcggttgataccttaaaacttgcaagg
aaatttttgccgaaagagcagaaaaaggatctggaaagcctgtgtgcctgctttggggta
aaaagagaaaatgcccatcgtgcatttgacgatgcatatgaaacatggcaggtttacgag
gcactcagggaacgatacgaggaggaatctgccggagatttcatgccaaagccgcttctt
tataaagcgaaaaaacagacgccggcaacggcacggcagataaaatacttaagagaatat
gcggcgcattatcagatcaaactgccggaaaatttcccggagatgacaaggagcgaggca
tcaagactgacggatcggctgatcgccacctatgggaaaatgccataa
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