Roseburia intestinalis M50/1: ROI_21230
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Entry
ROI_21230 CDS
T02598
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim02020
Two-component system
rim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ROI_21230
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ROI_21230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rim03021
]
ROI_21230
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
rim02035
]
ROI_21230
Transcription machinery [BR:
rim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ROI_21230
Bacterial motility proteins [BR:
rim02035
]
Flagellar system
Flagellar assembly proteins
Stator
ROI_21230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
GerE
HTH_23
DUF4143
HTH_Tnp_1
Med15_N
PhyR_sigma-like
DUF134
HTH_5
Sigma70_ECF
CHASE
SieB
Motif
Other DBs
NCBI-ProteinID:
CBL09144
LinkDB
All DBs
Position
2136010..2136774
Genome browser
AA seq
254 aa
AA seq
DB search
MKTVEKEKLWEEYQKNPSAELREKIIIEYAPLVRVVAGRLSMYLGYNVEYEDLVSYGIFG
LIDAIDKFDRGKDVKFETYASLRIRGSILDQIRKMDWIPRTVRQKRKKIEEAIKQIETKT
GRNASDEEIAQELGIGEEELNDWQTQLNVTNVISLNEFVEQGGEPVMDAKNNSHFIQPEE
SVQEEELKKVLMESLELLTEKEKKVILLYYYEDLTLKEISSILEVSESRVSQLHTKALLK
MRKKMGNYMGILID
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggtagaaaaagaaaagctctgggaagagtatcagaaaaatccttcggcagag
ctgcgggagaaaattattatcgagtatgctccgcttgtacgggttgtggcagggcggctt
agcatgtatctcggatataacgtggagtatgaagatctggttagctatggtatatttgga
ctgatagacgcgatagacaaatttgatcgcggaaaggatgtaaagttcgaaacttatgca
agcttaagaatacgtggatccatattagaccagataagaaaaatggactggattccacgg
acagtgcggcaaaaacgcaagaaaattgaggaagcgatcaagcagattgaaaccaaaaca
gggcgaaatgcctcggacgaagaaatagcacaagaattaggaatcggtgaggaagaatta
aatgactggcagacacagttgaatgttacaaatgttatctcactgaatgaatttgtagaa
cagggtggagaacctgtgatggatgcaaaaaacaattcgcattttattcagcctgaggag
tctgttcaggaagaagaactaaaaaaggttttaatggaatcgctggagcttttgacagaa
aaagagaaaaaggttattttgttatattattatgaggatctgacgttaaaagaaatcagc
agcatactggaagtttcggaatcaagggtttcacagcttcatacaaaagcgttgttaaaa
atgcgcaaaaagatgggaaactatatgggaatactgattgactga
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