Roseburia intestinalis M50/1: ROI_21430
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Entry
ROI_21430 CDS
T02598
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03030
DNA replication
rim03430
Mismatch repair
rim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROI_21430
03430 Mismatch repair
ROI_21430
03440 Homologous recombination
ROI_21430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rim03032
]
ROI_21430
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_21430
Enzymes [BR:
rim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ROI_21430
DNA replication proteins [BR:
rim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ROI_21430
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ROI_21430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PHP
DNA_pol3_a_NI
RNase_H_2
tRNA_anti-codon
DNA_pol3_a_NII
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
CBL09161
LinkDB
All DBs
Position
2155184..2157919
Genome browser
AA seq
911 aa
AA seq
DB search
MTKMFFDVFPTLEVNGDMKKLLSETEVTKVGMNHEKDHIRIYLNGTRLIHKKNIYQLEKN
IHDQIFKNRHMDVKVIEKYQLSEQYTAEKLMDLYKDSILEELKNYSLMEYNLLRSAKMEF
TGDSHLLLTLENTIIAQTRSHEIVEFLEKVVCERCGLDLSVELAFEEPKESKHKKNSDLQ
IQFEIKNILKRVQLHEESAPAKAEEVQPGNDVQTADTSTKTATKEQNHSKESAAGNNAGN
ANGKGENSFGKKEFRKKYDGGSYGGYKKSDNPDVLYGKDFEDETIPIEKIVGEMGEVTIR
CQVMTLETREIRNEKTIVIMSVTDFTDSIVLKIFTRNDQLPELLEGVKKGAFLKIKGVTT
IDKFDSELTIGSIVGIKKIPDFTSVRMDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAM
KWGHKAIAITDHGDVQAFPDANHAISPDDDFKVIYGVEAYLVDDLKDIITNSKNQNLDDT
YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIEELTSIRDDMV
IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILL
PQLNRFKLDTVAKALGVSLENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQVNQMGQA
SPETIMKMNTYHAIILATNDIGRINLYRLISLSHLTYYNKRPRIPKSEFVKYREGLLLGS
ACEAGELYRAIVGGRPEEEIIRLVKFYDYLEIQPLGNNEFMLKSDKESVSTIEELQDINR
RIVKLGETFGKLVVATCDVHFLDPEDEIYRRIIMAGKGFKDADDQAPLYLRTTEEMLKEF
EYLGSAKAEEVVITNPNKIADMCEKIAPVRPDKCPPVIENSDQMLRDICYTKAHRYVWRR
ASCNRKGASGS
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaatgttttttgatgtatttccgacactggaagtgaatggagatatgaaaaaa
ctgttatcagagacggaagttaccaaggtcggaatgaatcatgagaaagatcatatccgt
atctatttaaatggaacacgtcttatccataaaaagaatatctatcagctggaaaaaaac
atacatgatcagatttttaaaaaccggcatatggacgttaaagtcattgaaaaataccag
ttgtcagagcagtatactgcagaaaaactgatggatctgtataaggacagtattttagag
gaattaaaaaattacagtctgatggaatataatctgctgcgctccgccaaaatggagttt
acaggagattcccatctgctcctgactcttgaaaacacgatcattgcacagaccagatca
catgagatcgttgaatttttagagaaagtggtgtgtgaacgctgtggacttgacctttcc
gtagaacttgcttttgaggaaccgaaagagagcaaacacaagaaaaacagtgatttacag
atccagtttgaaatcaaaaatattttaaaacgtgtacagcttcatgaggagagtgcaccg
gcaaaggcggaagaagtacagcccgggaatgacgtacagacggctgacacatccacgaaa
actgccacaaaagaacaaaatcattcaaaagaatctgctgcaggaaataatgcaggaaac
gcgaacggaaagggagaaaattcgtttggcaaaaaagaattccgcaaaaaatatgatggc
ggatcctacggtggatataaaaaatcagataacccggatgtgctctatggaaaagatttt
gaagatgagacgattccaatcgagaagattgtcggggagatgggagaggttacgatacgc
tgtcaggtcatgacacttgagacgagagagatccgtaatgaaaaaacgatcgtgatcatg
tcagtcacggatttcacggactccattgttttaaagatttttaccagaaatgaccagctt
ccggaattgcttgagggggtgaaaaaaggtgctttcctaaagatcaaaggcgtcacgacc
atcgacaaatttgacagtgagcttacgataggttcgatcgtcggcatcaaaaaaatcccg
gattttacctcagtccgtatggatacgagcccggagaaacgtgtagagcttcactgtcat
accaagatgagcgatatggatggtgtctctgaggtaaaagatatcgtaaagcgtgcgatg
aaatggggacataaggcgattgcaatcaccgaccatggggatgtacaggcgttcccggat
gcaaaccatgcgatctcaccggatgatgacttcaaggtgatctatggtgtggaggcatat
ttggtggatgatttaaaggatatcatcaccaactcaaaaaaccagaatctcgatgatacc
tatgtggtgtttgaccttgagacgaccggattttcgccggataaaaataagatcatagag
atcggtgcagtgaaagtggtgcacggcgagatcacagaacgtttttctacgttcgtcaac
ccggaagtgccgatcccgtaccggatcgaggaactgacttccatccgagacgatatggtg
atcgatgcaccgaagatagagacgattctgccacagtttatggagttctgtggggatgca
atcatggtcgcacacaatgcagattttgatatgagttttatcatcaaaaactgtgagaga
cagggaatcgagaaagagtttacgatcattgatacggttgctttagcacgaattttgctg
ccacagttaaaccgttttaaactcgatactgtagcaaaagcgctgggagtttctctggag
aatcaccaccgtgccgtggatgatgcgggatgtacggcggagatctttgtaaaatttgta
aagatgcttcacgaccgtggcatggaaaccttagatcaggtcaaccagatgggacaggct
tcgccggagaccatcatgaaaatgaacacttatcatgcgatcattcttgcgacaaacgat
atcgggcgcatcaatctgtaccgtctgatttctctgtcacatctgacctactataacaag
agaccgcgtattccaaagagtgagtttgtaaaataccgtgaaggattgctgcttggatca
gcatgtgaggcgggagaactctaccgtgcaatcgtgggtggacggccggaggaggaaatc
ataagactggtaaaattttatgattatttagaaatccagccgcttggcaataatgagttt
atgttaaaaagcgacaaggaatccgtcagcacgatcgaggaactgcaggatatcaaccgc
cgtattgtaaaactgggagaaacgtttggaaaactggttgttgcgacctgtgacgtgcat
ttccttgacccggaggatgagatttaccgccgtatcatcatggcgggaaaaggatttaag
gatgcggatgaccaggcgccgctttaccttcggacgacagaggagatgctaaaggaattt
gaatatcttggctcggcaaaagcggaggaagtcgtcattactaacccgaacaagatcgcg
gatatgtgtgagaagatcgcacctgtgcgcccggataaatgtccgccggtcatcgaaaat
tctgaccagatgctgcgtgatatctgttataccaaggcacacaggtatgtatggcgaaga
gcttcctgcaatcgtaaaggagcgtctggatcgtga
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