Roseburia intestinalis M50/1: ROI_32130
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Entry
ROI_32130 CDS
T02598
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03420
Nucleotide excision repair
rim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROI_32130
03430 Mismatch repair
ROI_32130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_32130
Enzymes [BR:
rim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROI_32130
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROI_32130
MMR (mismatch excision repair)
Other MMR factors
ROI_32130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CBL10070
LinkDB
All DBs
Position
3202597..3204666
Genome browser
AA seq
689 aa
AA seq
DB search
MGLSQINDIDLMNEKKSLNKLFECSDSFTSVVFNSGAGSGKTYALIQCLKYIISIHHDDL
KNHNQKIGCITYTNVAAEHIKHQLGVSDVVEISTIHERIWSIICSQKSALLGLHIEKLNS
EVELLNSQLLSNSEYEKYRALDASAQERFFQLMLENKKKYNMAYNLKATEFKAAMPEEIR
LQYAELISNVSKFKGLVDKLFKRKRYLDCLCKIESGEKDYRVVNYDAMYNRDRLDKMRIS
HDTLLEYGYELIERYPRMRQLIIDKYPYILIDEYQDTADIVVKIMSLIEQYAKQIKHDVF
IAYFGDSVQNIYDAGVGERLTRLHPELDFVLKEYNRRSYIEVIDVANRVRNDEVVQKSIY
SDCSGGDVKLYYGSGENVSEFIEKCAEKWSVQIENPLHCMFATNQMVAEYSGFPNVYEAF
KRAEIYRGIGYKQLNSELLSHDIIHLGRVQAILYRLIKIYTEVREEKQPLRDILPSDKYR
NMSFLDLKLLIASLRAIDGNTLDELLGKIFNEYSMSNHQMYKLVMEKIFDVDEDLSYDKV
LAIFVTSLYKSWDETLESKEIIHDLLDIKLEELLNWFHYIHRDEKKKICYHTFHSTKGLE
YENVAIILGKDFGQDKDLFKYYFMNYEGNEEQDSDKYEKGRNILYVAITRAIKNLRVLYI
DDFEEIKDGIEKVFEKAYAFTNEISIDDF
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgggtttatctcaaattaatgatatagatttaatgaatgaaaagaaatctttgaataaa
ttgtttgaatgcagtgattcgtttaccagtgttgtatttaattctggagcaggctcagga
aaaacttatgcgttaattcaatgcttaaaatacattattagtattcatcatgatgattta
aaaaatcacaatcaaaagataggttgtataacatatactaatgtggcagcagaacatatt
aagcatcagttaggtgtttccgatgttgtggaaatatcaactattcatgaaagaatttgg
agtattatttgcagtcaaaaatcggctttgttaggtttgcatattgaaaaactaaatagc
gaggtagaattgcttaatagtcaattattaagtaattcagaatatgaaaaatatagagca
ttggacgcatcggctcaagaacgtttttttcagttaatgctggagaataaaaaaaagtat
aatatggcatataatttaaaggctacagaatttaaagcggctatgccagaagaaattaga
ttgcaatatgcggagcttatatcgaatgtttctaaattcaaagggttggtagataaactt
ttcaagagaaaaagatatttggattgtctttgcaaaatagaaagtggagaaaaagattat
agagtggtaaattatgacgcaatgtataatcgagatcgattagataaaatgcgcattagc
catgatacacttttggaatatggatatgaattaattgagagatatccaaggatgaggcaa
ttaatcattgataaatatccgtatattcttatcgatgagtatcaggacacggctgacatt
gttgtaaagataatgagtcttattgaacaatatgcaaaacagataaagcatgatgtgttt
attgcttattttggggactcggttcagaatatatatgatgctggggttggagaacgctta
actcggctgcatccagagttagattttgtgcttaaggaatataatcgtaggtcatatatt
gaagtgattgatgtggcaaacagagttcgaaatgacgaggttgtacaaaaatcaatttat
tctgattgtagtggaggggatgttaaactttattatggttcaggagaaaatgtaagtgaa
tttattgaaaaatgcgcagagaagtggagtgtacaaattgaaaatccattgcattgtatg
tttgcgacaaatcaaatggtggctgaatatagtggttttccaaatgtatatgaagcgttc
aaaagagcggaaatatatcgagggattggatataagcaacttaactcggaattgttaagt
catgacataattcacctaggaagggtgcaggcaattctatatagattgataaaaatatat
acagaagtgcgtgaggaaaagcaaccacttagagatattttaccatcagataaatataga
aatatgagttttcttgatttgaagttgcttatagcgagtttgcgggcaatagatggaaat
acattagatgaattattgggtaaaatatttaatgaatatagcatgtcaaatcatcaaatg
tataagcttgttatggagaaaatatttgatgttgatgaagatttatcctatgacaaagta
ctagcaatttttgtaacttctttgtataaatcgtgggatgaaactcttgagagcaaagaa
attatacatgaccttttagatataaagcttgaggaactgttgaattggtttcattatata
catagagatgaaaaaaagaaaatttgttatcatacatttcatagcactaagggattggaa
tatgaaaatgttgcaattattttaggaaaagattttggacaagacaaagatttgtttaaa
tattattttatgaattatgaggggaatgaagaacaagattctgataaatatgaaaaaggc
agaaatatattatatgtagcgattactagagctattaaaaatttgcgagtattgtatatt
gatgatttcgaagaaataaaagatggaatagaaaaagtttttgaaaaagcatatgcattt
acaaacgagatatcaatagatgatttttag
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