Roseburia intestinalis M50/1: ROI_33100
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Entry
ROI_33100 CDS
T02598
Name
(GenBank) Uncharacterized conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rim
Roseburia intestinalis M50/1
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rim03016
]
ROI_33100
Enzymes [BR:
rim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ROI_33100
Transfer RNA biogenesis [BR:
rim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ROI_33100
Prokaryotic type
tRNA splicing ligases
ROI_33100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CBL10153
LinkDB
All DBs
Position
3308054..3309268
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AA seq
404 aa
AA seq
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MNALEIKGKVNTALCYAKVVEDEAIEQIRRMCDYAMTEGSQIRIMPDVHAGKGCTIGTTM
TITDKAVPNVVGVDIGCGMYTVNLGKDEIDFEKVDEAAHFIPSGREVWEGRQEKFDLTEL
RYYRELKDAKRLARSLGTLGGGNHFIEIDEAADGTKYLVIHSGSRNLGKQVAELYQKLAI
NLNRGYGEYLEKRDEIIRTYKEQGRKREIQDALKQLHWQVYESPTSMPEDLCYLEGIYLE
DYLHDVEICQAFARRSREKMAEVILERTVMTGSDAFHTIHNYIDTDEMILRKGAIAAHKG
EKVLIPINMKDGSILAIGKGNPEWNFSAPHGAGRIMSRTKAKNELNLDEYKKAMEGVYTT
SVNENTLDEAPMAYKSLDDIIDVIRESVDVIDVMKPIYNFKASE
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcattagagattaagggaaaagtaaatacggctctctgctatgcaaaagtagta
gaggatgaggctatagagcagatcagacgcatgtgtgattatgcaatgacagaaggttcc
cagatccgtatcatgcctgatgtgcatgccggtaaggggtgtacgataggaacaacaatg
accataacagacaaggcagtgcctaatgtggtcggagtggatatcggatgtgggatgtat
acggtaaatcttggaaaagatgagattgattttgagaaagtggatgaggcagcgcatttt
attccatcaggacgtgaagtgtgggaaggacgacaggagaaatttgatctgacagagctt
cgatactacagggagctgaaagatgcaaagagacttgcaaggtctcttggaacacttgga
ggcggaaatcactttattgagattgatgaagcagcagatggaacaaagtatctcgtaatt
cattccggcagtagaaatcttggaaagcaggtggcagagctttatcagaaacttgccatt
aacttaaaccgtggttatggggagtatcttgaaaagagggatgagattatccgtacttat
aaggaacagggaagaaaaagggagatacaggatgccctaaagcagcttcactggcaggta
tatgaaagtcctacaagcatgccggaggatctgtgttatctggaaggaatatatctggag
gattatctgcatgatgtggaaatatgccaggcatttgccagaagaagcagagagaagatg
gcagaggttattcttgaaagaacagtcatgactgggagtgatgcttttcacacgattcat
aattatatcgacacagatgaaatgatattgaggaaaggtgcaatcgcagcccataaggga
gaaaaagtgctgataccgattaacatgaaggatggaagtatacttgccattggaaaagga
aatccggaatggaacttttctgccccacatggtgcaggaaggattatgtccagaacaaag
gcgaaaaatgaactcaatctggatgagtataagaaagctatggagggagtatatacaacc
tcagtaaatgaaaatacattggacgaggcaccaatggcatacaagtctctggatgacatc
atagatgtaatcagggagtcggtggatgttattgatgtaatgaaacctatatacaatttt
aaggcatcagagtag
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