Roseburia intestinalis M50/1: ROI_38090
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Entry
ROI_38090 CDS
T02598
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03420
Nucleotide excision repair
rim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROI_38090
03430 Mismatch repair
ROI_38090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_38090
Enzymes [BR:
rim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROI_38090
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROI_38090
MMR (mismatch excision repair)
Other MMR factors
ROI_38090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
ResIII
AAA_17
Vp24_capsid
Motif
Other DBs
NCBI-ProteinID:
CBL10582
LinkDB
All DBs
Position
3820200..3822443
Genome browser
AA seq
747 aa
AA seq
DB search
MSIYDTLNEQQREAVYQTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFT
NKAAGEMRERIDKIVGFGSESIWVSTFHSSCVRILRRHIDRIGFDTNFTIYDADDSKSLM
KDICKRLEIDTKIYKEKSFLAAISSAKDELITPTELMQRALTSSDYAKRKQAEVYREYQE
ALHKNNALDFDDLIMKTVELLQSDTEVKNYYQERFHYIMVDEYQDTNTAQFELIRLLAGK
YQNLCVVGDDDQSIYKFRGANIYNILNFEKHFPDAKTIKLEQNYRSTQNILNAANSVIAN
NVGRKSKTLWTANDEGKKIDFEQFNTGYEEADYIARDIAGGVRNGDYHYGDYAVLYRTNA
QSRLFEERFIVSNIPYKIVGGVNFYARKEVKDLLAYLKTIDNARDDLAVRRILNVPKRGI
GATTVNRVSDYAESYDISFYDALKRADEIPSIGKAASKVKPFVNLIQVFRSKLEFISISD
LLREVIEETGYVKELEAEGTDEAEARIENIDELLSKVVSYEESEEHPTLSGFLEEVALVA
DIDSLEDDSDYVVLMTLHSAKGLEFPKVYLAGMEDGLFPSYMSITSDDSSEQLEEERRLA
YVGITRAMKELTITCAKQRMIRGETQYNKVSRFVKEIPLELLEGKAPVVSRKESDSSIEN
TWNVKPKRMTMRQQPSGQSMQARAFASVHTKEEKLPYDIADRVLHTRFGEGTVVAIVEGG
RDYEVTVQFDTVGIKKMFASFAKLKKL
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatatgatacgttgaatgaacagcagagagaagcggtatatcagacagaaggt
ccggtactgatcttagccggggctggctccggtaaaacacgtgtgctgacacaccgcact
gcttatttaatcgaagaaaagggtgtcaatccttaccatatcatggcgatcacttttacc
aacaaagcggcgggagagatgcgggagcgaattgataaaattgtcggatttggctcggag
agcatctgggtatcgaccttccattcaagttgtgtgagaattttgcgccgtcatatcgac
cggatcggatttgacaccaattttacgatttatgatgcggatgattcaaaatcactgatg
aaggatatatgcaagcgtttagagattgataccaagatttataaagaaaaaagttttttg
gcagcgatttcatcggcaaaagatgaactgatcacaccgacagagctgatgcagcgtgca
ctgacatcttccgattatgcaaagcgtaaacaggcggaggtataccgggaatatcaggag
gcgttacataagaataatgcgctggattttgatgatctgatcatgaagacggtggaactt
ttgcagtctgatacggaggtaaaaaattattatcaggaacgttttcattatattatggtg
gacgagtatcaggatacgaatacggcacagtttgagctgatccgtcttttggcaggcaaa
tatcagaatctttgtgtggtgggtgatgatgatcagtctatttataagttccgtggagca
aatatttataatatattaaattttgaaaaacattttccggatgcaaagacgatcaagtta
gagcagaattaccggtctacgcagaatattttaaatgctgcaaacagtgtgatcgcaaac
aatgtcggcagaaagtcaaagacactctggactgcaaatgatgagggaaagaagattgac
tttgaacagtttaataccggctatgaggaagcagattatattgcgcgtgatattgcaggc
ggggtaagaaacggagattaccattatggggattatgctgttttgtaccggacgaatgcg
cagtcgcgtctgtttgaggagcgttttattgtatcaaacattccatataagatcgttggc
ggtgtaaatttctatgcgagaaaagaagtgaaagatctgctcgcttatttaaagacgatc
gacaatgcgcgcgatgatttggcggtgcgccgtattttaaatgttccgaaacgcggtatc
ggcgcaacaaccgtaaaccgtgtgtctgattatgcggagtcatacgatatcagtttttac
gatgccttaaagcgtgcggacgagattccttcgattggaaaagcagcgtcaaaggtaaaa
ccgtttgtaaatctgatccaggtattccgcagtaagctggaatttatcagcatttccgat
cttctccgggaagtgattgaggaaaccggatatgtcaaagagcttgaagcggaaggtacg
gatgaggcagaagcgaggatcgagaatatcgacgagctcttaagtaaagttgtgagttac
gaggaaagcgaagaacatccgacactgagtggctttttagaagaagtagcactggtggca
gacattgacagtctggaagatgacagcgattatgttgtattaatgactctgcacagcgca
aaaggacttgaattcccgaaagtgtatttagcaggtatggaggatggtctgtttccaagt
tatatgtcgatcacatcggatgattcgagtgagcagttagaggaagaacgccgtcttgcc
tatgtgggtatcacccgtgccatgaaagagctgacgatcacctgtgcaaagcagagaatg
atccgtggggagacacagtacaataaagtttcccgttttgtcaaagagataccgctggag
cttttagaaggaaaagcccccgttgtttcgcgaaaagaatcagattcttcgattgaaaat
acatggaatgtgaaaccaaagcgcatgacgatgagacagcagccttccggacagagcatg
caggcgcgtgcatttgcctctgttcatacgaaagaagaaaagctgccgtatgatattgca
gaccgtgttttacatacgcggtttggagaaggaacggtggttgccattgttgaaggtggg
agagattatgaggttacagtccagtttgacacggtgggaattaaaaaaatgtttgcttct
tttgcaaaattaaaaaagttataa
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