Roseburia intestinalis M50/1: ROI_38680
Help
Entry
ROI_38680 CDS
T02598
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROI_38680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rim03019
]
ROI_38680
03016 Transfer RNA biogenesis [BR:
rim03016
]
ROI_38680
Enzymes [BR:
rim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ROI_38680
Messenger RNA biogenesis [BR:
rim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ROI_38680
Transfer RNA biogenesis [BR:
rim03016
]
Prokaryotic type
tRNA degradation factors
ROI_38680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1CSD-TOTE-2
ANAPC2
DUF6240
PigL_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CBL10626
LinkDB
All DBs
Position
3873657..3875795
Genome browser
AA seq
712 aa
AA seq
DB search
MEKTILEERKKTIYQFICDEFYVPMKAKEMAVVLSVPKSQRSELQGVLDALVMDGRIEVT
SKGKYIKSEGKYLIGTFTAHARGFGFVSIEGEEEDIFIPESQVHGAFHMDTVQVAVTSEN
SGKRREGTITKIISRGTTRIVCTYEKSKTFGFAVPDNPKFGSDIFIPQERSKGAVSGHKV
VVEITDYGKEGRKPEGKVVEIIGHINDPGTDIMSIVKAYDLPVEFSEKIMHQVENVSNEV
STADMAGRMDFRDWQTVTIDGEDAKDLDDAITLTKEGDNYKLGVHIADVSNYVQEHSALD
VEALSRGTSVYLVDRVIPMLPHKLSNGICSLNAGENRLTLSCVMTIDTKGNVIDHTIAES
VIKVDRRMSYTSVKKILEDHDENEIGEYEELVPMFELMQELAAILRKKRMKRGSIDFDFP
ETKIVLDDKGKPVEIKPYERNVATKIIEDFMLIANETVAQDYFWQELPFVYRTHDNPDTE
KIKKLSTFINNFGYSIHIGQDEVHPKELQKLLQKIDGTPEEALISRLTLRSMKQAKYTTM
STGHFGLATPYYCHFTSPIRRYPDLQIHRIIKDNLRGRMNAKKIEHYDKILPEVAKHSSE
MERRADEAERETDKLKKVEYMSERIGEVFEGVISGVTEWGFYVELPNTVEGLVHVTTLVD
DYFHYNESTYELVGEVTNIRYKLGQRVHVMVTGTDKILRTIDFRVVRENEEE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaacaattttagaagaacggaaaaagacaatttaccagtttatctgcgatgag
ttttatgtaccgatgaaagcaaaggagatggcagtcgttttatcagtaccgaaatcccag
cgcagtgaactgcagggagtacttgacgcgcttgtgatggatggcaggatcgaggtgact
tccaagggaaaatatatcaaatcagaaggaaaatacttaatcggtacatttacggcgcat
gcaagaggttttggatttgtcagcatcgagggggaagaggaagatatcttcatcccggaa
tcacaggtgcatggtgcgtttcatatggatacggttcaggtggcggttacttctgagaat
agtggaaaacgcagggaaggtacgattacaaaaattatatcccgcggtaccacacgaatc
gtatgtacttatgaaaaaagtaagacgtttggatttgccgtgccggacaatcctaaattc
ggttcagatatttttattccgcaggagcgttcgaaaggagctgtcagcggacataaggtc
gtggtcgagatcacggactacggcaaagagggaagaaaaccggaagggaaagtggttgag
atcattggtcatatcaatgatccggggacagacattatgtctatcgtaaaggcttacgac
ctgccggtagaattttcagaaaagatcatgcatcaggtggaaaatgtctcgaacgaagtc
agcaccgcagatatggcaggacgcatggatttcagggactggcagacggtcacgatcgac
ggggaggatgcgaaggatcttgacgatgcgatcacactgacaaaagagggagataactat
aagcttggcgtgcacattgcggatgtttcaaactatgtgcaggagcacagcgcactggat
gtggaggcattatcccgcggtacatctgtttatttagtcgaccgcgtgatcccgatgctg
ccgcataaattgtcaaatgggatctgttctttaaatgcaggcgaaaaccgtctgacctta
agctgtgtgatgacgatcgatacaaaaggaaatgtgatcgatcacacgattgcagagtcc
gtgatcaaagtagaccgccgcatgagttataccagtgtgaaaaaaatccttgaagatcat
gatgaaaatgaaatcggagagtatgaagaactggttccgatgtttgaactgatgcaggaa
ctggctgcgattctgcgcaaaaaacgtatgaagcgcggctcgatcgattttgattttccg
gagacgaagattgtgcttgatgacaagggaaaaccggtcgagattaagccttacgagcgg
aatgttgcaacgaagatcatcgaagatttcatgctgattgccaatgaaacggtagcgcag
gattatttctggcaggaactgccgtttgtataccgtacacatgacaacccggatactgaa
aaaatcaagaagttatcgacatttatcaataattttggttattctatccatatcggacag
gacgaagtgcatccgaaagaactgcagaagctgctgcaaaagatcgatggaacgccggag
gaagcactgatcagccggctgacactgcgttccatgaagcaggcaaagtatacgaccatg
agtaccggtcattttggactggcaacaccttattactgtcattttacatcaccgatccgc
agatacccggatctgcagatccatcgtattatcaaggacaatctgcgcggacggatgaat
gcaaagaaaatagagcattatgacaagatcctgccggaagttgcgaaacattcgagcgag
atggagcgccgcgcggatgaggctgagcgtgagactgacaagctgaaaaaggtggaatat
atgtcagagcgtatcggtgaggtgtttgagggtgtgatctccggcgtgaccgaatgggga
ttttatgtggaacttccgaatacggtggaggggctcgtacatgtgacaacacttgtagat
gattatttccattataatgaaagtacttatgagctggttggcgaggtgacgaacatccgc
tataaactaggacagcgcgtacatgtcatggtgacaggaactgacaagatactgcgtaca
atcgactttcgtgtggtgcgggagaatgaggaagaataa
DBGET
integrated database retrieval system
