Roseburia intestinalis M50/1: ROI_38810
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Entry
ROI_38810 CDS
T02598
Name
(GenBank) DEAD_2.
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ROI_38810
09124 Replication and repair
03420 Nucleotide excision repair
ROI_38810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rim03021
]
ROI_38810
03036 Chromosome and associated proteins [BR:
rim03036
]
ROI_38810
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_38810
Enzymes [BR:
rim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
ROI_38810
Transcription machinery [BR:
rim03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
ROI_38810
Chromosome and associated proteins [BR:
rim03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
ROI_38810
DNA repair and recombination proteins [BR:
rim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
ROI_38810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
RNA_pol_Rpb2_7
PhoH
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
CBL10637
LinkDB
All DBs
Position
3886353..3888908
Genome browser
AA seq
851 aa
AA seq
DB search
MGRCITEDKGIDEKTDLYIWKGMWNQSFLCYNPYMSKKIEKNEKGVIKISVRDLVEFILR
EGDIDNRHGRGASAEAMLAGGRIHRKIQKRMGSNYHAEVPLKIAIEEDEYQLVIEGRTDG
ILIESAEEEITFADNFNHMTMPEDCKVTIDEIKGMYMKLDLLDDAVGVHRAQAMCYAYIY
ALQHDLATISVQMTYCNLDTEDIRYFHYDYTFEELAVWFEKLITEYKKWADFQFAWKKLR
QASIKPLQFPFSYREGQKELAAGVYRTISRKKNLFIQAPTGAGKTISTVFPAVKAVGEDL
ADKIFYLTAKTITGTVAREAFELLRKNGYQAKVLTITAKEKLCLCEEMECNPVNCPYAKG
HYDRVNDAVFSLLQKEDMITREVILEQAKEYNVCPFEMCLDTATWVDDIICDYNYVFDPN
VYLKRFFADGTTGDYIFLVDEAHNLVERSREMYSAIIYKEDFLLAKKILKKYGQAKLMRE
LEKCNRVLLSYKRECEKYVIYESIGNFAFDLMNVASDLDEFLQKAPEFPERKDLSEFYLN
LRNFLNIYELLDDHYVVYAEHEQDGRFKLKLYCVDPSKNLQERINKGNATIFFSATLLPV
GYYKSLLSTETDNYAVYAKTAFREEQKLLLLGNDVSSKYTRRSAGEFERIASYVKKTTDA
KKGNYMVFFPSYKMMEQVCDVFLEKCQSDPSCETETLIQQPGMKEEERESFLQAFSEELS
GERKGSLAAFCVMGGIFGEGIDLKNEQLIGAIVVGTGLPQISNEREILMGYFEKRLGAGF
DYAYRYPGMNKVLQAAGRVIRTVEDVGVIELLDERFLQSEYRALFPREWERQTVCRIDTV
EKYLEEFWNRS
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgggacgatgtataacagaagataaagggatagatgaaaagactgatttatatatctgg
aaaggtatgtggaatcagtcttttttgtgctataatccatatatgagcaaaaagattgaa
aagaacgaaaaaggtgtcataaaaatatcggtccgtgatctggtcgaatttatcctgcgg
gagggcgatatcgacaaccgccatggacgcggtgcttctgcggaggcgatgcttgccggg
ggaaggatccacagaaagatccagaagcggatgggcagcaattaccatgcggaggttcca
ctgaaaattgcaatcgaggaagacgagtaccagcttgtgatcgagggacgtacggacggg
attctgatcgagagcgcggaggaagagatcacatttgcggataattttaatcacatgacg
atgccagaagactgcaaagtcacgatcgacgagattaagggcatgtacatgaaacttgat
ctgttagacgatgcggtcggtgtacaccgtgcacaggcgatgtgttatgcctatatctat
gccctgcagcatgatcttgccactatttcagtgcagatgacgtactgtaatttagatacc
gaggatatccggtattttcattatgattacacatttgaggaacttgcggtctggtttgag
aagctgatcaccgagtacaaaaaatgggctgattttcagttcgcatggaaaaaactgcgt
caggcatccatcaaaccgctgcagtttccattttcctaccgggaagggcagaaggaatta
gcagccggtgtgtaccgcacgatcagcagaaagaagaatctttttatccaggcgccgacc
ggagcaggaaagacaatatcgaccgtgtttccggcggtcaaggcggttggggaggattta
gcggacaagatcttttatctgacggcaaagacgatcacagggacggtggcgcgggaagca
tttgaacttctgcgtaaaaacggatatcaggcaaaagtgcttacaatcacggcaaaagaa
aagctgtgcctgtgtgaggagatggagtgcaatcctgtcaactgtccatacgcaaaaggg
cattacgacagggtcaacgatgcagttttttcgttgctgcaaaaggaagatatgatcacg
agagaggtgatcttagaacaggcgaaggaatacaatgtctgtccgtttgaaatgtgtctg
gatacggcgacatgggtggatgatatcatctgtgattacaattatgtatttgacccgaat
gtctatctgaaacgtttttttgcggatggtaccacaggagattacatttttctggtggat
gaggcgcacaatctggtcgagcggagccgggagatgtacagtgccattatatataaggaa
gattttcttttggcaaagaagattttaaagaaatatggtcaggcaaaactgatgcgggaa
ctggaaaaatgtaaccgcgtactgctctcctataagcgtgagtgtgagaaatatgtgatc
tatgaatcaattggaaattttgcgtttgatttaatgaacgtggcgtcggatctcgatgaa
tttttacagaaagcaccggagttcccggagcggaaagatttaagtgagttttatctgaat
ctgcgcaattttttgaatatttatgaactgctggatgaccactatgtcgtttatgcggaa
cacgagcaggatggacgctttaaactcaaattatactgtgtggatccgtcgaaaaacctg
caggagcgtattaacaaagggaatgcaactattttcttttccgcgacgctgcttccggtg
ggctattataagagcctgctctcgactgaaacggataattatgcagtttatgcaaagacg
gcattccgggaagaacagaaattgctgctgctcggaaatgatgtgagcagcaagtatacc
agacgaagtgcaggggagtttgagcggatcgcttcctatgtaaaaaagacgacggatgca
aaaaaaggaaattatatggtgttttttccatcctacaaaatgatggagcaggtctgcgat
gtctttctggaaaaatgccagtcagatccatcctgtgaaacggaaacgttgattcagcag
cctgggatgaaagaagaagaaagagagtcttttttacaggcattttcggaagaattatcg
ggagagcggaaaggatcgctggctgcattttgtgtgatgggcggtattttcggggaaggg
atcgacctgaaaaatgaacagctgatcggtgcgattgtcgtcggcacgggactgccgcag
atcagcaatgagcgggagatcctgatgggatattttgaaaaacggcttggtgccggattt
gattatgcctaccggtatccgggaatgaacaaggtgttacaggcggcaggaagagtgata
cggacggtggaggatgtcggagtcatagaacttttagatgagcgtttcctgcagagtgaa
taccgtgcgctgttcccaagagaatgggaaaggcagacggtatgcaggatagatacggtg
gaaaagtatttagaagaattctggaaccgttcttaa
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