Roseburia intestinalis M50/1: ROI_40980
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Entry
ROI_40980 CDS
T02598
Name
(GenBank) DNA polymerase III, subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03030
DNA replication
rim03430
Mismatch repair
rim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROI_40980
03430 Mismatch repair
ROI_40980
03440 Homologous recombination
ROI_40980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rim03032
]
ROI_40980
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_40980
Enzymes [BR:
rim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ROI_40980
DNA replication proteins [BR:
rim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ROI_40980
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ROI_40980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
TIP49
RuvB_N
AAA_22
AAA_30
AAA_19
ResIII
AAA_14
AAA_assoc_2
AAA_18
AAA_5
AAA_7
AAA_16
Rad17
AAA_24
Mg_chelatase
TsaE
PIF1
DUF815
MazG-like
Viral_helicase1
AAA_2
AAA_28
ATPase
Motif
Other DBs
NCBI-ProteinID:
CBL10812
UniProt:
D4KKD2
LinkDB
All DBs
Position
4100498..4101775
Genome browser
AA seq
425 aa
AA seq
DB search
MSYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAK
AVNCEHPVDGSPCGECPACKAIAAGNSMNVIEIDAASNNGVDNIRQIREEVEYRPTEGKY
KVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRISI
ETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYLGQDLTYDKVLE
TLGAVDTEIFSRLLRQILEKNVTGAIGVIDEMVIEGRELGQFVNDFTWYLRNLMLVQSSD
DMEDVLDISTENLALLKEEAQMVDTDILMRYIRIFSELSNQIRYAVQKRILIEIAVIKLC
KPEMEKDYGSLIDRVDSLEKKLDKGIVVTQASGDMAAGTTGSSAASAVLKKRNFPRQSLK
ISNRS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacacagcattatatcgtaagttccgtccacaggagtttgaggacgtcaaagga
caggaacacattgttacaacattaaaaaaccagatcaaagcagacaggatcgggcatgcg
tatctgttttgtggaaccaggggaaccggtaagacgaccatcgcaaagatatttgcaaag
gcggtcaactgtgagcatcctgtagacggcagcccgtgtggagagtgcccggcctgcaag
gcgattgcagcgggcaactccatgaatgtgatcgagatcgatgccgcatcgaataacggt
gtggataacatccgccagatccgtgaggaggtggaataccgtccgacggaaggcaaatac
aaagtctacattatcgatgaggttcatatgctttccataggtgcatttaatgcactgcta
aagacactcgaggagccgccatcatatgttatttttattctggcaacaacggaggcacac
aagataccgatcacaatcttatcccgctgtcagagatacgatttcaggcgtatttccatt
gaaacgatctcagcgagactgatggagctgatggaaaaggagcaggtcacagtggaggaa
cgtgcgatccgctatatcgcaaaggcggcggacggttccatgcgggatgcactcagtctg
ttagaccagtgtattgcgttttatcttgggcaggatcttacttacgacaaagtacttgaa
acactcggtgcggttgatactgagattttcagcagactgctccgtcagattttagagaaa
aatgtgaccggtgcaatcggtgtgatcgatgagatggtcattgagggcagggaattagga
cagtttgtcaatgattttacctggtatctgaggaatctcatgcttgtacagagctcggat
gacatggaggatgtgcttgacatttcaacggagaatcttgccctgttaaaagaagaggcg
cagatggtagacacagacattcttatgcgctatatccgtattttttcagaactgagtaat
cagatccgttatgccgtacagaagcgtatactgatcgagattgcggtgatcaaattatgt
aaaccggagatggaaaaagattatggttcgctgatcgaccgcgtggacagtctcgaaaaa
aagctggataagggtattgtggtaacgcaggcatccggtgacatggctgcggggacaaca
ggttcttctgccgcatcggcggtgttaaaaaaaaggaacttcccaaggcaatccctgaag
atatcaaacagatcatga
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