Candidatus Riesia pediculicola: RIEPE_0264
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Entry
RIEPE_0264 CDS
T01218
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rip
Candidatus Riesia pediculicola
Pathway
rip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIEPE_0264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rip03019
]
RIEPE_0264
03016 Transfer RNA biogenesis [BR:
rip03016
]
RIEPE_0264
Enzymes [BR:
rip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RIEPE_0264
Messenger RNA biogenesis [BR:
rip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RIEPE_0264
Transfer RNA biogenesis [BR:
rip03016
]
Prokaryotic type
tRNA degradation factors
RIEPE_0264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_2
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ADD79625
UniProt:
D4G862
LinkDB
All DBs
Position
complement(263554..265671)
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AA seq
705 aa
AA seq
DB search
MRKKFLSSFVQTFQLGKNDCVIETGSLARQSTSSLIIHMGGTSVLISVVEQTEEKKQESN
FFPLIVNYQERSYSIGRIPGSFFRREGRSGENEILTSRLIDRSLRPAFPEQFRNEIQIIA
TVVSVNPKINPDILSIIGASAALSISHIPFHGPIGSVRIGYIGGRYILNPSYEDLKESEL
DLIVSGTEDKILMVEARSSLLKEDIILEAIDFSKKYQKTIIDNINKLSEKIGSKKVFQKK
EETDFHLKNYILEKVEKDLRDAYLIPDKKTRLSRIQEIKDKIFSEASLNLEVFNSFQANE
IFFGIEKEIVRSRILNEGIRIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVT
LGNERDAQIRDEIVGEKLDHFILHYNFLPYSVGEIGLVGVPKRREIGHGNLVKRGMIAVM
PNFSNFSYTIRVVSEVIESNGSSSMASACGTSLAMMDAGIPIKSAIAGISIGLIKEKENF
VILSDILGDEDHFGDMDFKVMGNEEGISALQMDLKINGIEDEILRFALFQAKEARCKILK
KMKNAISNPRKSISNFAPRIRKIYIEPHKIKDLIGKGGSTIRSLTEETNSVIDIEDTGEV
KISSMDELSIKKTILRIKEITSEVEIGCVYKAKVIRIVDFGLFVSILSNKKEGLVRMQTN
KPLKDIRFSNKKVTSRKSQIQIGQILSVKAVDIDRQGRIQFILIR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaaaaaattcctgagttcttttgttcaaacttttcaattgggaaagaatgattgc
gtgatagaaactggatctttagctagacaatccacttcttctttaataatacatatggga
ggtacctctgtccttatttcggttgtagaacaaacagaagaaaaaaaacaagagtctaat
ttctttcctttgattgtgaattaccaagaaagatcttattcaattggaagaatacctgga
agtttttttagaagggagggaagatccggagaaaatgaaatattgacgtctagactgatt
gatcgatctctgagaccagcttttccggagcaatttagaaatgaaattcagatcattgct
actgtggtttcagtgaatccaaaaattaatccggatatcctatcaataataggagcttct
gctgcactttcgatttctcatattccctttcacggacctatcggatcggttagaatcggt
tatattggaggaagatatatcttaaatccaagttatgaagatctaaaagaaagtgaattg
gatctgatagtttctggaacggaagacaaaattttaatggtggaagcaagatcttcctta
ctcaaggaagatattatattggaagctattgatttctctaaaaagtatcaaaaaactatc
atcgataatattaataaattatctgaaaaaatcggttcaaagaaagtctttcaaaaaaaa
gaagaaaccgattttcatcttaaaaattatattttggaaaaagttgaaaaggatttacga
gatgcttatttaattccagataaaaaaactcgtctttcaaggattcaagagatcaaagat
aaaattttttctgaagcatctctgaatctagaagttttcaactcatttcaggcgaatgaa
atattttttggaatagaaaaggaaatagtaagaagtagaatattgaatgaaggaattaga
atcgatggaagaaaattgaatgagatcagaaaaattgactgtcgtgtaggagttttatct
agaacgcatggatcttctttatttacgagaggagaaacacaaactttagtaatagttact
ttaggaaatgaaagagatgctcaaataagagatgagattgtaggtgaaaaactcgatcat
ttcatattacactataattttcttccttattctgtcggagagatcggattagttggcgtc
ccaaaaagaagagagataggacacggaaatcttgtaaaaagaggaatgatagctgttatg
ccaaatttttccaatttttcatatactatacgagttgtatctgaagtgatagaatccaat
ggatcttcttctatggcttctgcttgcggaacctctcttgcgatgatggatgctggaatc
ccaataaaatcagcgatagctggaatttcgataggtttgatcaaagaaaaagaaaatttt
gtaattctttctgacattttaggagatgaagatcatttcggtgatatggattttaaagtg
atgggaaatgaagaaggaatcagtgctttacaaatggatctcaaaattaacggaattgag
gatgaaatattacgatttgctctttttcaagcaaaagaagcaagatgtaaaattttgaaa
aagatgaaaaatgcgatatctaatccaagaaaatccatatccaactttgctccaagaatt
cgaaaaatatatattgaacctcataagataaaagatttgataggaaaaggaggatccacc
atacgttcattaacagaagaaactaattcggtaattgatattgaagatacaggagaggta
aaaatttcttcgatggatgaacttagtatcaagaaaacgattctcagaattaaggaaatc
acttcagaagttgaaatcggatgtgtatacaaagcaaaagttatcagaatagttgatttt
ggattatttgtttctatcttaagtaataagaaggaaggtttagttcgtatgcaaactaac
aaacctttgaaagatattcgattctcaaacaaaaaagttactagtaggaagtctcaaatt
caaattggtcaaatactttctgtgaaagcagtggatatcgatcggcaaggaagaattcaa
tttattttaattcgatga
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