Candidatus Riesia pediculicola: RIEPE_0404
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Entry
RIEPE_0404 CDS
T01218
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rip
Candidatus Riesia pediculicola
Pathway
rip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RIEPE_0404 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rip03021
]
RIEPE_0404 (rpoC)
03400 DNA repair and recombination proteins [BR:
rip03400
]
RIEPE_0404 (rpoC)
Enzymes [BR:
rip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RIEPE_0404 (rpoC)
Transcription machinery [BR:
rip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RIEPE_0404 (rpoC)
DNA repair and recombination proteins [BR:
rip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RIEPE_0404 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ADD79534
UniProt:
D4G8J2
LinkDB
All DBs
Position
complement(397970..402148)
Genome browser
AA seq
1392 aa
AA seq
DB search
MKEILNFLKSHDRNEEFDTIKISLASPDTIRSWSFGEVRKPETINYRTFKPERDGLFCSR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIELSSPIAHIWFLKSL
PSRIGLLLDIPLRDIERVLYFESYVVTQEGTTNLKIGQILTEEQYLNSLEEFGEEFSAGM
GAESIQKLLKNLHLKSQCKYLRKELDRSSSETKRKKIAKRIKLMESFIHSGNKPEWMILD
ALPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPEIIIRNEKRMLQ
EAVDALLDNGRRGRAISGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLNQCGLPKRMALELFKPFIYGKLERMGLASTIKAAKKMVEREESIVWDVLDDVIQKHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTSEAQSEA
RSLMMSTRNILSPASGEPIIVPSQDVVLGLYYMTRDCINAKGEGMVLSSPKEAEKAYRIH
VASLNARVKVRIEESRIKRDGSFDRKKTIVDTTIGRAIFWMIVPEGLSYDLINRPLGKKA
ISTMLNICYRTLGLKKTVEFADQVMYTGFHYAARSGASVGIDDMEIPKKKIEIISEAEKE
VAEIQEQFQSGLVTIGERYNKVIDIWSVANERVAMAMMENLSTEIVINKNLQEEQQTSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEKDCHTREGITLNSMLEDGEVGDRLSEKIL
GRMTAEDISLLTNSDESIFIPRNTLLDEEWCDKLELYAIDSIKVRSVICCETHFGVCSYC
YGRDLARGNLISIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRVASESNIRVRNSGKI
MLKNVKCIRFQNVSVVISRHAEIRVLDNFGRIKENHKLPYGSHLNKFEGDSVEKGEIIAN
WDPHAIPIIAEVSGIIQFQDVIEGQSVVQQTDELTGISSIIVLETSERSSSAKDLRPTIK
ITDEKGQNILTSSSDSPAQYFLPGRSIIQFNEGSYVKSGEILAKIPQESTVTKDITGGLP
RVADLFEARQPKEPAILAEISGYISFGRETKGKRRLVITSNIDQSVHEEMIPKWRQLNIL
EGDFVSKGDILSEGPESPHDILRLRGSHEVSKYITEEVQEVYRLQGVKINDKHIEVIVRQ
MLRKVTVIDAGDSNFLEGEQVEYTRIREKNKQLSSFKKKPATYRRDLLGITKASLTTESF
ISAASFQETTRVLTEAAIAGRKDDLRGLKENVIVGRLIPAGTGYAYHNKNKKISESKKDH
SVVDETKSREEI
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaatactaaattttttgaaatcacatgatcgtaatgaagaatttgatacgatt
aaaatatccctagcttctccagacacgattcgatcttggtccttcggtgaagtgaggaaa
ccggaaaccattaactatcgaacctttaaaccagagagagatggacttttttgttctaga
atattcggaccagtgaaagattatgaatgtttatgtggaaaatataagagactgaaacac
cgtggagtaatatgtgaaaaatgcggagtagaagtgactcaatctaaagttcgtagagaa
agaatgggacacattgaactatcttctcctatagctcatatatggtttctgaaatctctt
ccgtcaagaattggtctacttctcgacattccgttgagagatatcgaaagggttctttat
tttgaatcttatgtagtcacacaagaaggtacgacaaatctgaaaatcggacaaatattg
acagaagaacaatatttaaactctttagaagaatttggagaggaattttcagctggaatg
ggagcagagtctatacagaaacttttaaaaaatcttcatctgaaatctcaatgtaaatac
ctaagaaaagagctagatcgatcgagttctgaaactaaacgaaaaaaaattgccaaaagg
ataaaactgatggaatctttcattcattccggaaataaaccagaatggatgatcttggat
gctctcccagtattacctccagatctaagacccttggttccattagaaggaggcagattt
gctacttccgacttgaatgatctgtataggagagtaatcaatcgaaataatcgtttgaaa
agattgttagatctgtctgctccagagatcattattagaaatgagaaaaggatgttacaa
gaagcagtcgatgctcttttggacaatggtagaagaggaagagcgatctcgggatctaat
aagagaccactgaaatctcttgcagatatgatcaaaggaaagcagggtaggtttcgacaa
aatcttcttggaaagagagtagattattctggaagatccgtgatcacagttggtccttat
ctcagattgaatcaatgtggtcttccaaaaaggatggcactggaactttttaaacctttt
atatacggaaaattagaaaggatggggttggcgagcactatcaaagcagcaaaaaagatg
gtagaaagagaagaatcgattgtttgggacgtcttggatgatgtaattcaaaagcatcct
gtaatgttaaacagagctcctacattgcatagattaggaattcaagctttcgagccaata
ttaattgaaggaaaagcaattcaactacaccctcttgtttgcgctgcatataatgctgat
ttcgacggtgatcaaatggctgtccatgttcctctaacatctgaagctcaatcagaagct
cgatcattaatgatgtctactaggaacatcttatctccagctagtggagaaccgatcatt
gtcccttctcaggacgttgttctaggtttgtattatatgacgagagattgcatcaatgca
aaaggagagggaatggttttatccagtccaaaagaggcagagaaagcatatagaattcat
gtggcttctttgaatgccagggttaaagttagaatagaggagtctagaataaaacgtgat
ggtagttttgatcgaaagaaaacaatcgtcgatacaactattggaagagcgatattttgg
atgatagttccagagggtttatcttacgatctaatcaaccgacctctaggaaaaaaagcc
atctctacgatgttgaacatttgttatagaacattaggattgaaaaaaactgtcgaattt
gcagatcaagttatgtatacaggatttcattatgctgcacgttcaggagcttccgtagga
atagatgatatggaaatacctaaaaagaagatcgagatcatatcggaagcagaaaaagaa
gtagctgaaattcaggaacaatttcaatctggattagtcactatcggagaaagatataac
aaagttatcgatatttggtcagtggctaacgaacgagtagctatggcaatgatggagaat
ttatctacagaaattgtgatcaacaaaaaccttcaagaagagcaacaaacctcgttcaac
agcatatttatgatggcagattctggtgcaagaggatccgctgcacaaatacgacaacta
gctggtatgagagggttgatggctaaaccggatggatcgattattgaaactccgataacc
gctaactttagggaaggactaaatgtgttacagtattttatttcaacacatggagcaaga
aagggattagctgatactgctttaaaaacagcaaactcaggatatctaactagaagattg
gtagatgttgcgcaagatttggtaattactgaaaaagattgccatactagagaaggaatt
acgctcaattctatgttggaagatggagaagtgggagatcgattgagtgaaaaaatctta
ggaagaatgacagcagaagatatttcattattaacaaactccgatgaatctatttttata
cctagaaatactttgttagatgaggaatggtgtgataaattggagctctatgcaattgat
tcgattaaagttcgatctgtcatttgttgtgaaacacatttcggagtttgctcctattgt
tacggaagagatctggcaagaggaaatctaattagtattggagaagcagttggagtgatc
gcagcgcaatctatcggagaacctggaactcaattgaccatgcggacttttcatatagga
ggagcagcatcgagagtagcatctgagtccaatatcagagttcgtaactccggaaaaata
atgttgaagaacgtcaagtgtattcgttttcaaaacgtctctgttgtgatttctcgacat
gcagaaattagagttttggataattttggaaggatcaaagagaatcataaattaccatac
ggttcacatctcaataaattcgagggagattcagttgaaaaaggagaaatcattgctaat
tgggatccccatgctataccgatcatagcagaggtttctggtatcatacagtttcaagat
gtgatagaaggacaatccgttgttcagcaaacagacgaattaaccggaatatcttcaatc
atcgttttagaaacttcggaaagatcttcttcagcaaaagatttaagacctactataaag
ataacagatgaaaaaggtcagaacatcttaacctcttcttcagattctccagcacaatat
tttttacctggcagatcgataattcagttcaacgaaggatcttacgtaaaatctggagaa
attttagcaaaaattcctcaagaatctactgtaacaaaagatattacaggaggattacca
agagtggctgatttatttgaagctagacaacctaaagaacccgctattcttgcagaaata
agtggatatatttctttcggaagggagacaaagggaaagcgtagactagtcattacttcc
aatatagatcaatcggttcatgaagaaatgattccaaaatggagacaattaaatattctt
gaaggagactttgtttctaaaggagatatcctttcagaaggaccagaatctccccacgat
attctacgtctaagaggttctcatgaagtttccaaatacattacggaagaagttcaagaa
gtttatcggttacaaggagtgaagatcaacgataaacatatcgaggttatagtaagacag
atgttaagaaaagtgactgtcatcgatgcaggagactcgaattttttggaaggagaacaa
gtagaatatacaagaatacgagaaaaaaataaacagttatcttcctttaaaaaaaaacca
gctacttatcggagagatctcttaggaatcacaaaagcttctttaacgacagaatctttc
atctctgcagcttcctttcaagaaactacgagagttttaacagaagcagctattgctgga
agaaaggatgatttgaggggtttgaaagaaaatgtgatagtaggaaggttgataccggct
ggtacaggatacgcttatcataacaaaaataaaaaaatttcggaatcaaagaaagatcac
tctgttgtcgacgaaactaaaagccgtgaagaaatctag
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integrated database retrieval system
