Candidatus Riesia pediculicola: RIEPE_0578
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Entry
RIEPE_0578 CDS
T01218
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rip
Candidatus Riesia pediculicola
Brite
KEGG Orthology (KO) [BR:
rip00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RIEPE_0578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rip03021
]
RIEPE_0578
Transcription machinery [BR:
rip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RIEPE_0578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Spo16_N
Motif
Other DBs
NCBI-ProteinID:
ADD79724
UniProt:
D4G901
LinkDB
All DBs
Position
complement(555239..557128)
Genome browser
AA seq
629 aa
AA seq
DB search
MDRNPKSQLKVLVNKGKEKGYLTYSEVNDNLPEDIVDSDQIEDIIQTIIDMGIRVTEEVP
DEDELILTDPTSSTDEETVEAATQVLSSVEQEIGRTTDPIRMYMREMGTIELLTREGEID
IAKRIEDGINQIQRSISEYPKSISYILKQYFLFESGEMKLSDIITGLSSEDTFSSSKNVD
KNFSSMKLNRINSVLDEILSNNYEKKDISKSQNSTRTNVEDEWNHIDPKIARKKFLELQN
QYEKVTHSLKENGIKSSQSILDIQDLCEIFKQFRLVPKQLDFLISDIRKTIEKIKIQEKL
IINISFKEYKIPKKYFLNLFSENPKEYDLKELIVSNRYNKKDEKKFKLDSTIVQALNELN
EIEKDTGISISKIKEIGRKISIGETIARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNH
ISRQILQETGREPSPEELSERMLIPEEKIRKVLKIAREPISMETPIGDDEDSHLGDFIED
TTLELPLESATSESLRSATNEVLSGLTTREAKVLRMRFGIDMHTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRSELLRSFLDEQ
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcaacccgaaatctcaattaaaagtactagttaataaaggaaaagaaaaagga
tatctgacttattctgaagtgaacgataatcttccggaagatatagttgattcagatcaa
atagaagatattattcaaacaataatcgacatgggaattcgtgttacagaagaagttccg
gatgaagatgagctcatactaacagatcctacgagtagtacagacgaagaaactgtcgaa
gctgctactcaagttttgtctagtgtagaacaagaaatcggaagaacaactgatccaatc
aggatgtatatgagagaaatgggtacgatagaacttcttactagagaaggcgaaattgac
attgctaaaagaatagaagatggtattaatcaaattcaacgttccatatcagaatatccg
aaatctattagttacattttgaaacaatattttctattcgaatctggagaaatgaagtta
tctgatatcattaccggcttatcttcagaagatactttttcgagttcgaaaaatgttgat
aaaaatttttcttctatgaaattaaatcgaataaattccgttttagatgagattttatca
aacaactatgaaaaaaaagatatatctaagagtcaaaattcgacaagaactaacgtagaa
gatgaatggaaccatattgatccaaaaattgccagaaaaaaatttttggaacttcaaaat
cagtatgaaaaagtcactcattctcttaaagagaatggaataaaatcttctcaatccatt
ttggatattcaagatctatgtgaaatatttaaacaatttcgattagttccaaaacaactc
gattttcttatatcagatataagaaaaaccatagaaaagattaaaattcaagagaaactc
atcataaatatttcgtttaaagaatataaaattccaaaaaagtattttttaaatcttttt
tctgaaaatccgaaagagtacgatctaaaagaattaatcgtatccaatcgatataataaa
aaagatgaaaaaaaattcaaattagattcgacaattgttcaagctctcaatgagttaaac
gaaatcgaaaaagataccggaataagcattagtaaaattaaagaaattggtagaaaaata
tccattggagaaacaatagcaagaagagctaaaaaagaaatggtagaggcaaatttaaga
ttggtaatttcaatagctaaaaaatatactaatcgtggattacagtttttagatcttatt
caagaaggaaacataggattaatgaaagccgtagataaatttgagtacagaagaggatat
aaattttctacttatgcgacatggtggattagacaagctatcactagatctatagctgat
caagctagaacaattcgtattccagttcatatgattgaaacgatcaacaaactaaatcat
atatctcggcaaatacttcaagaaacaggaagagagccatctccagaagagctttcagaa
agaatgcttattcctgaagaaaaaattagaaaagtccttaaaatagcaagagaacctatc
tcaatggaaaccccaataggagacgacgaagacagtcatttgggagatttcatagaagat
acaacattagaattaccattagaatctgctacttcagaaagtttaagatctgcaaccaac
gaagttctttcaggacttactacaagagaagccaaagtattacgtatgagatttggaatt
gatatgcatacagatcacactttagaagaagtaggaaagcagtttgatgtcactagagaa
agaattagacaaatagaagcaaaagctctaagaaaattaagacatcctagccgttcagaa
ctactaagaagttttttagatgaacaatga
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