Agrobacterium pusense IRBG74: BN877_I0108
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Entry
BN877_I0108 CDS
T02867
Symbol
polA
Name
(GenBank) DNA polymerase I (POL I)
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir03030
DNA replication
rir03410
Base excision repair
rir03420
Nucleotide excision repair
rir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN877_I0108 (polA)
03410 Base excision repair
BN877_I0108 (polA)
03420 Nucleotide excision repair
BN877_I0108 (polA)
03440 Homologous recombination
BN877_I0108 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rir03032
]
BN877_I0108 (polA)
03400 DNA repair and recombination proteins [BR:
rir03400
]
BN877_I0108 (polA)
Enzymes [BR:
rir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN877_I0108 (polA)
DNA replication proteins [BR:
rir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN877_I0108 (polA)
DNA repair and recombination proteins [BR:
rir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BN877_I0108 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN877_I0108 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
IMS_HHH
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
CDI07026
UniProt:
U4PSM3
LinkDB
All DBs
Position
113443..116448
Genome browser
AA seq
1001 aa
AA seq
DB search
MLPMKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDV
GVTPTHFAVIFDYSSKTFRNELYDLYKANRTAPPEDLVPQFGLIREATRAFNLPCIETEG
FEADDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGIPDVIEKWGV
GPEKMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENII
ANAELARISRQLVALRTDVPLDQPLEALVLEPQNGPKLIAFLKAMEFTTLTRRVAEATET
DASAIEAANVPVQWGADAHGPDLDAPGAPAAGEAAAGVTGTAVSPAIPARKGVGEGSAPA
DLATARQTLFAAAKIDTSAYTTIRDLATLDLWVAAARETGVVAFDTETTSLDPMQAELVG
FSLAIADNGKDASGSDIRAAYIPLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLE
DEAVLKVAQNLKYDYLLMKRHGVVMQSFDDTMLISYVLEAGKATHGMDSLSERWLGHTPI
PYKDVAGSGKSSVTFDFVDIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERP
LVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEEEIYELAGERFNIGSPKQLGDILFG
KMGLPGGSKTKTGQWSTSAQVLEDLAAEGIELPRKIVDWRQLTKLKSTYTDALPGYIHPE
TKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIEL
RVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF
GLANQLGIARSEAGEYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSS
NPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEAENLSARMLLQVHDELIFEVDEA
EIEKTLPVVVSVMENAAMPAISMKVPLQVDARAADNWDEAH
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgctacccatgaaaaaaggcgatcatctcttcctcgttgacgggtccggtttcattttc
cgggccttccatgccatcccgccgctgaaccgcaagtcggacgggctgccggtcaacgcc
gtttccggcttctgcaacatgttgtggaagctcctgaaggatgcgcgcaacaccgatgtc
ggcgtgacgcccacgcattttgcggtaatttttgattattcatcaaagacattccgcaat
gagctttatgatctctataaagccaatcgcacggcgccgccggaagatctggtgccgcaa
ttcgggctgatacgggaggcgacgcgcgccttcaaccttccctgcatcgagacggaaggc
ttcgaggcggacgatatcatcgccacctatgcccggcaggcggaggccattggggcggat
gtcaccatcatctcctccgacaaggatttgatgcagctcgtcactgccaatgtccacatg
tacgatgcgatgaaggacaagcaaatcggcatccctgatgtcatagagaaatggggcgtg
ggtcccgaaaagatgatcgacctgcaggccatgaccggcgattcgaccgacaatgttccg
ggcatccccggcatcggtccaaagacggccgcgcaattgctggaagaatacggcgatctc
gatacgctgctcgcccgggcaggtgagatcaagcagcagaagcgtcgggaaaatatcatc
gccaatgcggaacttgctcgtatttccagacagcttgtggccctgaggaccgacgtgccg
ctggatcagccgcttgaagcactggtgctggaacctcaaaacggcccgaaactcattgcc
ttcctgaaggcgatggaattcaccacgctgacgcggcgggttgccgaagcgacagagacc
gatgcttccgccattgaggccgccaatgtgccggttcagtggggcgctgacgcccatggt
cccgatctcgatgcgccgggcgctccggctgcgggtgaagcggctgctggcgtaacgggc
actgcggtttcgcccgctattccggcgcggaaaggtgtcggggagggcagcgcgccggct
gatcttgccaccgcccgccagacgctttttgccgccgccaagatcgacacgagcgcctac
acgacgatcagggatcttgcgacgctggacctctgggttgcggcggcgcgggaaacgggg
gtcgtcgccttcgatacggaaacgacctcgcttgatccgatgcaggcggaactcgtcggg
ttttcgctggcaatcgccgataatggcaaggatgcctcgggcagcgatatacgcgccgcc
tacattcccttgacgcacaagactggctccggcggcgatctattcagcgatggtatcagg
ctcgccgaaggccaggtgccctttgacgaagcactggtccgtctcaaggacttgcttgaa
gacgaggccgtgctgaaggtcgcgcaaaatctcaaatatgactatctgctcatgaaacgc
catggcgtcgtcatgcagagtttcgacgatacgatgctgatctcctatgtgcttgaggct
ggcaaagcgacgcacggcatggattcgctgtccgaacgttggctcggccatacgccgatc
ccctataaggacgtggcgggatcgggcaagtcgagcgttaccttcgattttgtcgacatc
gacaaggcgacggcatatgcagcggaggacgctgacgtcaccttgcggctgtggatggcg
ctgaagccgcggcttgtttcagaacggctgaccaaggtttacgagcggctggaacgtccg
cttgtgcctgttctggcgcatatggaggagcgtggcatcaccgtcgaccggcaaatcctc
tcacgtctttccggcgaactcgcccagaaggcggcagcgtttgaagaggaaatctacgag
ctggccggcgagcgtttcaacatcggctcgccaaagcagctcggcgacatcctgttcggc
aagatgggcctgccgggcggctccaagaccaagaccggccaatggtcgacctcagcacag
gtgctggaggatttggcagcggaaggtattgaactaccccgcaagatcgtcgactggcgg
cagctgacgaagctgaaatccacctatacggatgctttgccgggatatatccacccggag
acgaaacgtgtgcatacatcctatgcgctggcctccaccacaacaggccgtctgtcgtcc
tcggaaccgaaccttcagaacatccccgtccgcacggcggaagggcgaaaaatccgcacg
gctttcatctccacgcccggccacaagcttctttccgccgactacagccagatcgaactg
cgcgtgctggcccatgtcgccgatattccgcagcttcgaaacgccttcgaaaacggcatc
gacattcatgccatgacggcttcggaaatgtttggcgtgcctgtcgaaggcatgccctcg
gaagtgcgccgccgcgccaaggccatcaatttcggcattatctacggtatttcggctttc
ggtctcgccaaccagctcggtatcgcccgttctgaagccggcgaatatatcaagaaatat
ttcgagcgttttcccggcatccgcgactacatggaggcgacaaaggctttcgcccgtgag
aacggttatgtcgagacgattttcggccgccgcgcccattatccggaaatccgctcgtcc
aacccttccgtgaaggccttcaacgagcgcgccgccattaacgccccgatccagggctcc
gcggcggatataatacggcgcgccatggtccgtatcgaaccggcgctggaggctgaaaac
ctgtccgcccgcatgctgttgcaggtgcatgacgaactcatcttcgaggtcgatgaagcg
gaaatcgagaaaactctgcccgtcgtcgtctcggtcatggaaaatgcggccatgccggca
atctccatgaaggtgccattgcaggtggatgcccgcgcggctgacaactgggacgaggcg
cattga
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