Agrobacterium pusense IRBG74: BN877_I1271
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Entry
BN877_I1271 CDS
T02867
Symbol
dnaE1
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir03030
DNA replication
rir03430
Mismatch repair
rir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN877_I1271 (dnaE1)
03430 Mismatch repair
BN877_I1271 (dnaE1)
03440 Homologous recombination
BN877_I1271 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rir03032
]
BN877_I1271 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rir03400
]
BN877_I1271 (dnaE1)
Enzymes [BR:
rir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN877_I1271 (dnaE1)
DNA replication proteins [BR:
rir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN877_I1271 (dnaE1)
DNA repair and recombination proteins [BR:
rir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN877_I1271 (dnaE1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
McdB_C
DUF655
Motif
Other DBs
NCBI-ProteinID:
CDI08179
UniProt:
U4Q397
LinkDB
All DBs
Position
1242279..1245779
Genome browser
AA seq
1166 aa
AA seq
DB search
MGDTVVRAETSDENLNTPGFVHLRVHSAYSLLEGALPLKKIMSKAVSDGQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYER
LVDLVSRAYLEGEGSGHSVHITRAWLEEDSNAGLIALTGASGGPVDMALREGHAAQAKER
LLTLKSLFGDRLYIELQRQSGYDRSHERRMIGLAYDHDIPLVATNEAFFPSKADYEAHDA
LMAVAHNAIVSDDSRFRLTPDHYLKSREEMTALFADLPEALDNTVEIALRCSYVLKKRGP
ILPRFTGASDDPEAAERAEAEELRRQAVEGLDQRLAALGMAPGYTEQDYRERLDFELGVI
SRMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFL
NPERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMP
YGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADREPVVARLLDIAQKIEGLYRHAST
HAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVD
FVAKRGIKVDLAAIPLDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALV
ALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIKEEMDKQRERFVDGAIKNGVSKPQADTIFDLLAKFANYGFNKSHAA
AYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEIVAPSVQTSFRQ
FETGENRIYYSLAAIKGVGEGAVEHIVAIRGDKPFTSLEDFCLRIDPKQINRRVLESLIN
AGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGNGPEKLVLPAFQPWL
ASEKLLREYQVLGFYLTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQ
ERKTRTGNKMGIVTFSDASGQYEAVLFSEGLGQYRDLLEVGKSLVITVQAEERPEGIGLR
IQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTRGDGSVYFIVIKDEGSREIEVEL
TEKYRISPEIAAALRSAPGVVDVELV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatacggttgtgcgggcagaaacctctgacgaaaacctgaacaccccgggtttc
gttcatcttcgggttcattccgcttactccctgcttgaaggggctctgcccctcaagaaa
atcatgtccaaggccgtttcagacggccagccggccattgccattacagataccaacaac
ctcttcgtcgcgctggagttttccgaaaaggcgcgggatgagggtttgcagcccatcatc
ggctgccagctgtcgatcgacatgcaggatgcggcggaggatcgccgcaaccacaacagc
caccttcagaaacttcccgctatcgttcttctcgccgccaatgccgaagggtatgagcgg
ctggtggatcttgtgagccgtgcctatcttgagggcgaggggagtggccattccgtgcac
attacccgcgcatggctggaagaggactcaaatgcgggcctaatcgcgctgaccggcgct
tccggcggcccggtggatatggccttgagggaaggtcatgccgcccaggcgaaggaacgg
ctgctgacactgaagtcactcttcggtgaccggctttatatcgaattgcagcgtcagtcc
gggtatgaccgttcgcatgagcggcgtatgatcggcctcgcttatgaccatgatattccg
ctggttgccacaaacgaggcgttcttcccgtcaaaggccgactacgaagcgcatgacgcg
ttgatggcggtggcgcataatgccattgtttcggacgacagccgctttcgcctgacgccc
gaccattacctcaaaagtcgggaggaaatgacggcgttgtttgcagacctgccggaggcg
ctggacaataccgtcgagattgcgttgcgctgttcttatgtgctgaagaagcgcgggcct
atcctgccacgtttcaccggcgccagcgatgatcctgaggcggcggaacgcgccgaagcg
gaagagcttcggcgtcaggcagtggaggggctggatcagcgccttgccgcgctcggtatg
gcgcccggttatacggaacaggattatcgcgagcggctcgatttcgaactcggcgtcatc
tcgcgcatgaagttccccggttatttcctgatcgttgccgacttcatcaaatgggccaag
cagcacgatatcccggtcggaccgggccgtggttcgggcgcgggttcgctcgtcgcttac
gcgctgacgattaccgatgtcgatccgctgcgtttctcactgctgttcgaacgcttcctt
aatcctgaacgcgtgtcgatgcccgacttcgacatcgatttctgccaggatcgtcgtgaa
gaagtgatccgctacgttcaggccaaatacggccgcgagcaggtggcgcagatcatcacc
ttcggttcgctccaggcgcgcgcggccctgcgcgacgtcggccgcgtgctggaaatgccc
tacgggcaggtggacaagatctgcaagctggtgcccaacaacccggccaacccgacgccg
ctttcgaaggcgatcgaggaggagccgcgcctgcaggaagaagcggacagggagcctgtt
gtcgcgcgcctgctggatatcgcccagaagatcgaggggctttatcgccacgcctcaacc
catgctgccggtatcgtcatcggcgaccgcccgctgtcgaagctggtgccgatgtatcgc
gatccgcggtccgatatgccggtcacccagttcaacatgaagtgggttgaaagcgccggc
ctcgtcaaattcgactttcttggcctgaaaacgctgacggtgctgaaggtggccgtcgat
tttgtcgccaagcgcggcatcaaggtggatctcgccgccatcccgctcgatgacgccaag
acgtatgagatgctgtcgcgcggtgagaccatcggcgtgttccaggtggaaagtgccggc
atgcgcaaggcgctgatcggcatgcggccggactgcatcgaggatatcattgctctggtg
gcactatatcgtcccggcccgatggaaaacatccccgtttataacgctcgcaaacatggc
gaagaagagctggagtcgatccacccgaccatcgaccatctgctgaaggaaacacagggc
gttatcgtttatcaggaacaggtgatgcagatcgcccaggttctgtcgggttattcgctt
ggcgaagccgatcttctgcgccgcgccatgggtaagaagatcaaggaggaaatggacaag
cagcgcgagcgcttcgttgatggcgccatcaagaacggtgtctcgaaaccgcaggccgac
accatcttcgatcttctcgcaaaatttgccaattacggcttcaacaagagccatgccgcg
gcctatgccatcgtctcctaccagacggcctatatgaaggcgcattatccggtggagttc
ctggcggcctccatgacgctcgatatggccaatacggaaaagctcaacgatttccgtcag
gacgccggtcgtctcggcattgaaatcgtcgcgccgtccgtccagacctcgttccgccag
ttcgaaacgggcgagaaccgcatttattattcgttggctgccatcaagggtgttggcgaa
ggagcggtcgaacatatcgtcgcgatccgcggcgacaagccgttcacgagcctcgaggat
ttctgcctgcgcatcgaccccaaacagatcaaccgtcgtgtgctcgagagtctcatcaat
gccggtgctttcgattgtttcggccgcgaccgcgcagagttgatcggcgggctggaccgt
atcatcggttatgcccagatggcgcagaacaaccgcaccatcggccagtcggacatgttc
ggctcgggcggcggcaatggcccggaaaagctggtgcttcctgccttccagccctggctt
gcctcggaaaagctgctgcgcgaatatcaggttctcggtttctacctcacggcccacccg
ctggatacctatcgccccgtactggaaaaattgcgcgtgcagaatttcgccgatttttcc
gctgctgtgaaacagggggcgactgccgggcgtcttgccggcaccgttaccggcaaacag
gagcgaaagacgcgcaccggcaacaagatgggtatcgtcaccttctcggatgcttcaggg
caatatgaggcggtgttgttttccgaaggtctcggccagtaccgcgacctgcttgaggtc
ggcaagtcgttggtgatcacggtgcaggcggaagagcgccctgaaggtatcggtctgcgc
atccagacggcgcagtcgctggaagaaaaatccgtgcagatgcagaaggcactgcgtgtt
tatgtgcgtgattccggcccgctgaaaacggttgcccgccacctcaacaccaggggtgac
ggctcggtctatttcatcgttatcaaggatgaggggagccgcgagatcgaggtcgagctg
acggagaaataccgtatttcgcccgaaatagccgctgctcttcggtcagcccccggtgtc
gttgatgtagagctggtgtga
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integrated database retrieval system
