Agrobacterium pusense IRBG74: BN877_I1744
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Entry
BN877_I1744 CDS
T02867
Symbol
Mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN877_I1744 (Mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rir03400
]
BN877_I1744 (Mfd)
Enzymes [BR:
rir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN877_I1744 (Mfd)
DNA repair and recombination proteins [BR:
rir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN877_I1744 (Mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CDI08642
UniProt:
U4PXN5
LinkDB
All DBs
Position
complement(1693779..1697276)
Genome browser
AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVSSADTPLTIGNVPAGMEALLLAEMARAGTSVAYVMSDGQRIADLEQILGF
VAPDIPVMTLPAWDCLPYDRVSPSADTSARRLAALAGLISHAKKPHPAIVLVTVNAMLQK
MAPRDIIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEKLETAFDYLKGFRIVTDHTAREAAKERSKL
VLDYYEARRASGETKGSTQGAPYKPVSPGQLYLNGKDFDTALSAVNAVRLTPFNEQDSEG
RPVATLDAHVGPRWARQPTEGESEERVNVFALAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVEKLGKGEAASAVLSLEAGFETGNLAVIGEQDILGDRMVR
RSKRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PELVAPDGLYDEFAARFPYDETEDQLNAIEAVREDLAAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVA
DGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETMMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTTAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEQVQDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNR
DLPTPEKRLTGAAMIMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtgtcgtcggccgatacgccgctgaccatcgga
aacgtgcccgcaggcatggaagcgctgctgcttgccgagatggcgcgcgcaggcacctcg
gttgcctatgtgatgtcggatggccagcgcatcgccgatctcgaacaaattctcggcttt
gttgcgcccgatattccggtcatgacgctgccggcctgggactgccttccctatgaccgc
gtgtcaccaagcgccgacacgtcggcgcgtcgcctggcggcgcttgccggtctcatcagc
cacgcgaagaaaccgcatccggccatcgtgcttgtcaccgtcaacgccatgctgcagaag
atggcgccgcgcgacatcatcgaaagccttggcttctccgcgagacccggcaaccagatt
cgcatggaggatattgccgcgcggctggagcgcaacggtttcgaccgggttgcgacggtg
cgcgaagtgggcgagttcgccgtgcgcggcggtattctcgatgttttcgtgccgggcact
gaggagcctgtgcggctcgatttcttcggcgatacgctggaaagcatccgcactttcgat
cccgccagccagcggaccatcggccaggcgcgctcgctcgatctgaacccgatgagtgaa
gtgacgctgacgcccgatacgatcagccggtttcgtaagaattatctctcgctgttcggt
gcggcgacgcgtgacgatgcgctttatcaggccgtttccgaggggcgccgttatgccggc
atggagcactggctgccgctgttttacgagaagctggagaccgccttcgattacctgaag
ggtttccgcatcgtcaccgatcacacggcacgcgaggcggccaaggagcggtccaagctg
gtgctcgattattacgaggcgcggcgggcttccggcgagacgaagggatcgacgcagggc
gcgccctacaagcccgtgtctcccggtcagctttatctcaacggcaaggatttcgacacg
gccctgtctgccgtcaatgccgtgcgtctgacgcccttcaatgagcaggatagcgaggga
agacccgtcgccacgctggacgcgcatgtcggcccgcgctgggcgcggcagccaaccgaa
ggcgaaagcgaagagcgggtcaatgtctttgccctggctgtgaaacacatagccgagcgc
cgcgccaagggctggaaggtgctgataacaggctggtcggaaggctcgctcgaccggttg
ctgcaggtgctgaacgaacacgggcttgagaagatcaagccggttacctcgctaaaagag
gtggagaagcttggcaaaggcgaggccgcctccgcggtgctgagccttgaagccggtttc
gaaaccgggaatcttgccgttatcggcgagcaggacattctcggcgaccgcatggtgcgg
cgctccaagcgccgcaagcgcggtgcggatttcatttcggaagtggctggtctggacgag
ggctcgctcgtcgttcatgccgaacacggcattggtcgttttgtcggcctgcagaccatc
gaggcggcgggcgcaccgcgcgcctgtctcgaactgcactatgccgatgacgccaagctg
tttttgccggttgaaaacatcgatctcctctcgcgttacggctcggacgcggcggaggca
acgctcgacaagctcggcggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctcgacatggccgatgagcttatccgcatcgcagcggcgcgtctcgtgcgccatgcg
ccggagcttgtcgcgcccgatgggctgtatgatgagtttgctgcccgtttcccctacgac
gaaaccgaggaccagctgaacgccatcgaggcggtgcgggaggatctcgcggccggccgg
ccgatggaccgtctcatctgcggcgatgtcggtttcggcaagaccgaagtggcgctgcgc
gccgccttccttgccgccatgaatggtgtgcaggtggctgtcgtggtgccgaccacgctg
ctcgcccgccagcatttccggactttctcggagcgtttccgcgggttgcccatccgcgtg
cagcaggcttcccgtctcgtcggctccaaggaactggcgctgaccaaaaaggaagttgcc
gatggcaagaccgatatcgtcgtcggcacgcatgcgctgctcggtgcgggcatcagcttt
gccaatctcggcctgctcatcatcgatgaagagcaacatttcggcgtgaagcacaaggag
cggctgaaggagctgaaaagcgatgtgcatgtgctgacgctatcggcgacgcccattccg
cgcaccttgcagctcgccatgaccggggttcgcgaactgtcgctcatcaccaccccgcct
gtcgaccgcatggcggttcgcactttcatctcgccatttgacccgctcgtcattcgcgag
acgatgatgcgcgagcattaccgtggcggccagagtttctacgtttgcccgcggcttgcc
gatctcgccgatatccatgccttcctgcaatcggatgtgccggaactgaaggtggcggtg
gcgcacggccagatggcggcgggcgagctggaagacatcatgaacgccttctacgacggc
aaatatgatgtgctgctatcgacgaccatcgttgaatccggccttgacgtgccgaccgcc
aatacgctgatcgtgcaccgcgccgatatgttcggtcttgcccagctgtaccagctgcgc
ggccgtgtcggccgctccaaggtgcgcgccttcgcgctcttcaccctgccggtcaacaag
gtactgaccacgactgccgagcgccggctgaaggtgctgcaatcgctcgatacgctcggc
gccggtttccagctggcgagccacgatcttgatattcgcggtgcgggcaatctgctcggg
gaagaacagtccggccatatcaaggaagtcggtttcgagctttatcagcagatgctggaa
gaggctgtcgccgaagtgaagggtgacgagcaggtgcaggatagcggctggtcgccgcag
atttcggtcggcacatccgtcatgatcccggaagattatgttcctgatctgcatctgcgc
atgggcctttaccgccggcttggtgagcttgccgatatcagcgaaatcgacggtttcggc
gctgaaatgatcgaccgtttcggcccgctgccaaaagaagtgcagcatcttctcaagatc
gtctacatcaagtcgctctgccgcattgccaacgtcgagaagctggatgccgggccgaag
ggcgtcgtcgtgcagttccgcaacaaggaattcccgaacccggcggcgctcgtcggttac
attggcaagcagggatcgatggcgaagatccgtcccgatcacagcctgttcctcaaccgc
gatctgccgacgccggaaaagcggctgacgggtgcggcgatgatcatgacgcagttggcg
gagctggcgcggtcgtag
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