Agrobacterium pusense IRBG74: BN877_I2236
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Entry
BN877_I2236 CDS
T02867
Symbol
rpoD
Name
(GenBank) sigma D (sigma 70) factor of RNA polymerase
KO
K03086
RNA polymerase primary sigma factor
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN877_I2236 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rir03021
]
BN877_I2236 (rpoD)
Transcription machinery [BR:
rir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN877_I2236 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Relaxase_C
DUF5856
Motif
Other DBs
NCBI-ProteinID:
CDI09127
UniProt:
A0A1L9CEK6
LinkDB
All DBs
Position
complement(2133700..2135754)
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AA seq
684 aa
AA seq
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MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEDAEEAAGGDDDGDSDGDDSEGGELAPSSGTALATAKKKE
PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRD
ELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRKLRAPTGDED
VTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEA
RLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLR
LAESYGVKRDSFLEQYHGAELDPNWMKSIANLAARGWKEFAREESNTIREIRQEIQNLST
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaagtcaaagaaaacgaagaagcagaaaacgaacgcgacggtgcgacggac
ggcccgcttctcgacctttcggatgacgcggtcaagaaaatgatcaaggccgccaagaag
cgcggctatgtgacgatggacgagctgaattccgtcctgccgtccgaagaggtgacctcc
gagcagatcgaagacacgatggcgatgctgtccgacatgggcatcaacgtgatcgaggac
gaggatgccgaggaagccgccggtggcgatgacgacggcgattccgacggtgacgattcc
gagggtggcgaacttgcgccttccagcggcaccgcgcttgcgaccgccaagaagaaagaa
ccaaccgaccgcaccgacgaccccgtgcgcatgtatctgcgcgagatgggttctgtcgag
cttctgtcgcgcgaaggcgaaatcgccatcgccaagcgcatcgaggccggccgcgagacg
atgatttcgggcctgtgcgaaagcccgctgacgttccaggcgctgatcatctggcgcgac
gaactcaacgaaggcaccacgctgctgcgcgagatcatcgatctcgaaacgacctattcc
ggcccggaagccaaggctgcgccgcagttccagagcccggaaaagatcgaggccgaccgc
aaggccgccgaagaaaaggaaaagacccgcaagctgcgtgctccgaccggtgacgaggat
gtcaccgatgttggtggtgacggcctgccgccggaagaggaagaagaggacgacgacgag
tccaatctttcccttgctgcgatggaagccgaactgcgtccgcaagtcatggaaacgctc
gacaccattgccgacacctacaagaagctgcgcaagcttcaggatcagcaggtggaagcg
cgtctggcctgcaccggtacgctctcttccggccaggagcgccgttacaaggaattgaag
gatcagctgatcacggccgtgaagtcgctttcgctgaaccagaaccgcatcgacagcctt
gtcgagcagctctacgacatttcaaagcgtctgatgcagaacgaaggccggttgctgcgc
cttgcggaatcctatggcgtcaagcgcgacagcttcctcgagcagtatcacggtgcggaa
ctcgatccgaactggatgaagtcgatcgccaatctggccgcccgcggctggaaggaattc
gcgcgcgaagaaagcaacacgatccgggaaatccgccaggagatccagaacctctccacg
gaaaccggcatttccatcgccgaattccgtcgcatcgtttcgatggtgcagaagggtgag
cgcgaagcgcgcatcgccaagaaggagatggtcgaggccaacctgcgtctcgtgatctcg
attgcgaagaagtacacgaaccgtggtctgcagttcctcgatctcattcaggaaggcaat
atcggcctgatgaaggcggtggacaagtttgaataccgtcgcggttacaagttctcgacc
tatgcgacatggtggatcagacaggcgatcacccgctcgattgctgaccaggcccgcacg
atccgtattccggtgcacatgatcgaaacgatcaacaagatcgttcgcacctcgcgccag
atgctgcacgagattggccgcgagccgaccccggaagagttggccgaaaagctggccatg
ccgctggaaaaggtgcgcaaggttctgaagatcgccaaggagccgatctcgctcgaaacc
cccgtgggtgacgaagaggattcgcatctcggtgacttcatcgaggacaagaacgcgctg
ctgccgatcgacgccgccattcaggcgaacctgcgtgaaacgaccacccgcgtattggca
tcgctgacaccgcgtgaggaacgtgttctgcgcatgcgcttcggcatcggcatgaacacg
gaccatacgctggaagaggtcggccagcagttctcggtcacgcgcgaacgtattcgccag
atcgaggcgaaggcgctgcgcaagctcaagcacccaagccgctcaagaaagctccgcagc
ttcctcgacagctaa
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