Rahnella inusitata: I2123_00320
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Entry
I2123_00320 CDS
T09790
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
riu
Rahnella inusitata
Pathway
riu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I2123_00320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
riu03021
]
I2123_00320 (rpoC)
03400 DNA repair and recombination proteins [BR:
riu03400
]
I2123_00320 (rpoC)
Enzymes [BR:
riu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I2123_00320 (rpoC)
Transcription machinery [BR:
riu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I2123_00320 (rpoC)
DNA repair and recombination proteins [BR:
riu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I2123_00320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QUT15322
LinkDB
All DBs
Position
complement(71249..75472)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRGG
LASLHARVKVRITEEIKNTEGEVTHKTSIIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDIIKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNTGTIKL
SNHKHVSNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMGKGDGASVNGGETVANW
DPHTMPVISEVSGFIRFADMVDTQTITRQTDDLTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTDFLEGEQAEMSRVKIANRKLEAEGKITATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYSYHQERARRKAQGEVPV
VPQVSADEATANLAELLNAGFGNSNDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
attttcggaccagtaaaagactacgaatgcctgtgcggtaagtacaagcgtttaaaacat
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccgactgcacacatctggttcctgaaatcgctg
ccatcgcgcatcggtttgctgttggatatgccactgcgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgactaacctcgaaaaacgccagatcctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaagatg
ggtgcagaagctatccaggccctgttgaaaaacatggatctggaagcagagtgcgagcaa
ctgcgtgaagagttgaacgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gtgctgccggtactgccgccagacttgcgtccattggttccgttggacggcggccgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtaatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcggtagatgctttgctggataacggccgtcgcggtcgtgcaatcaccggctctaac
aagcgtccgctgaaatctctggcagacatgattaaaggtaaacagggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactctggtcgttccgttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaaattggagctgcgtggcctcgccaccaccatcaaagccgctaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgagcacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggttctgaccggtcctaaagaagctgagcgtatttatcgcggcggt
ctggcctctctgcatgcgcgtgtcaaagtgcgtattaccgaagagatcaaaaataccgaa
ggcgaagttacgcacaagacgtcgattatcgacacgactgttggtcgcgccatcctttgg
atgatcgtacctaaaggtctgccgttctcaatcgtcaaccagcctctgggtaaaaaagct
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttattttt
gctgaccagatcatgtacaccggttttgcttacgctgcccgttcaggtgcgtcagtaggt
atcgatgacatggtaatccctgcgaagaaagcagagatcatcgaagaagcagaaaccgaa
gttgccgaaatccaggagcagttccagtctggtttggttaccgctggcgaacgctacaac
aaagtgatcgatatctgggctgcagcgaacgaacgtgttgctaaagcaatgatggaaaac
ttgtctgtcgaagacgtcgtcaaccgtgacggtgttgttgaacagcaggtttcctttaac
agtatctttatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gccggtatgcgtggcctgatggctaagccggatggttccatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggcttggcggataccgcacttaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggtcgttaccgaagacgactgtggtacacacgaaggcatt
atgatgactccggtcatcgaaggtggcgacgttaaagaaccactgcgcgaacgcgttctg
ggtcgtgtgactgctgaagatatcatcaagccgggtacggcggatatcctggttccacgt
aacaccctgcttcacgagaagacgtgtgatctgttagaagagaactcagtcgacagcgtg
aaagtacgttcagtcgtaagttgcgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgattggtgttattgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatcaagtatccaggttaagaacacgggtacgattaaactg
agcaaccacaagcacgttagcaactctaacggcaaactggttatcacttcccgtaacact
gagctgaaattgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
tccgtgatgggcaaaggtgatggcgcttcagttaacggcggcgagaccgtagctaactgg
gatccacatacaatgccagttatcagtgaagtgagtggtttcattcgctttgccgatatg
gttgatactcagaccattacacgtcagacagatgacctgaccggtttgtcctctctggtc
gttctggattccgcagaacgtactggtagcggtaaagacctgcgtccagcactgaaaatc
gttgatgccaaaggcgacgacgtattgatcccaggtacagatatgcctgctcaatacttc
ctgccaggtaaagcgattgttcagctggaagatggtacgcagatccactctggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcacgtcgtccgaaagagcctgcaatccttgctgaaatcagc
gggatcatctccttcggtaaagaaaccaaaggcaaacgtcgtctggtaatttctccgttg
gatggcagcgatgcttacgaagaaatgatccctaaatggcgtcagctgaacgtgttcgaa
ggcgagattgtggaacgtggtgacgtcgtatccgacggccctgagtctccgcacgacatt
ctgcgtcttcgtggtgttcatgcggttacccgctatatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgctggtggcacagacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggaagctgaaggcaaaatcacggca
acatttagccgtgacctgctcggtatcaccaaagcctctttggcgaccgagtccttcatc
tccgctgcgtcgttccaggaaaccacgcgcgttcttaccgaagcggctgttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtgggtcgtctgatcccagccggt
accggttactcttaccatcaggaacgtgctcgtcgtaaagctcagggcgaagtgccagtt
gttccgcaggtgagcgcggatgaagcaacggctaacctggctgaacttctgaacgcaggt
ttcggtaacagcaacgacgagtaa
DBGET
integrated database retrieval system
