Rahnella inusitata: I2123_00325
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Entry
I2123_00325 CDS
T09790
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
riu
Rahnella inusitata
Pathway
riu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I2123_00325 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
riu03021
]
I2123_00325 (rpoB)
03400 DNA repair and recombination proteins [BR:
riu03400
]
I2123_00325 (rpoB)
Enzymes [BR:
riu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I2123_00325 (rpoB)
Transcription machinery [BR:
riu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I2123_00325 (rpoB)
DNA repair and recombination proteins [BR:
riu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I2123_00325 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QUT15323
LinkDB
All DBs
Position
complement(75564..79592)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPFLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYTTEQILDLFFEKVTYQIRDNKLQME
LVPERLRGETASFDIEADGKVYIEKGRRITARHIRQLEKDDIQRIEVPVEYIAGKVVAKD
YIDTNTGELIVPANMELSLDLLAKLSQAGHKTIETLFTNDLDHGAYMSETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMRKLIGIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVREGMVT
DEINYLSAIEEGNFVIAQANSNLDDEGHFLEDLVTCRSKGESSLFSRDQVDYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNEEEMNPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIQSALVAGGVEADKLGKLPRDRWLELSLTDEDKQNQLEQLAEQYDE
LKSEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKHEEVSK
LREFIQRAYDLGDDVRQKVDLTTFTDDEVLRLAENLKKGMPIATPVFDGAKETEIKQLLE
MGGVPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gttttggacattccctttctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggtcagcacggtttggaagctgcattccgttctgtatttccaatcaaa
agctacagcggcaattctgagctgcaatacgttagctaccgtcttggtgagccagtattc
gacgttaaagaatgccagatccgcggtgtaactttctctgcgccattgcgtgtgaaactg
cgtctggttatctacgagcgtgaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaatggtacctttgtgattaacggt
actgagagggttatcgtatctcagcttcaccgtagtccaggcgtattctttgacagtgat
aagggtaaaacccattcatcgggtaaagtgctgtacaacgcacgtatcatcccttatcgc
ggttcatggttagatttcgagttcgacccgaaagataacctgtttgtacgtattgaccgt
cgccgtaaattacctgcgacgatcattctgcgtgcattgagctataccactgaacagatc
cttgacctgttctttgagaaggtgacttaccagatccgcgacaacaagttgcagatggaa
ctggtacctgagcgcctgcgcggtgaaacagcttcatttgatatcgaagctgacggcaaa
gtctacatcgagaaaggccgccgtatcactgctcgccatattcgtcagcttgaaaaagac
gacattcagcgcatcgaagttcctgttgagtacatcgcagggaaagtagttgctaaagac
tacatcgacactaataccggtgagctgattgtccctgcgaacatggaattgtctctggat
ctgctggcgaaactgagccaggccggacacaaaacaattgaaacgctgttcaccaacgat
ctcgatcatggcgcgtacatgtccgagaccattcgcgtcgacccaaccagcgatcgcttg
agcgcattggttgagatctaccgcatgatgcgtcctggtgagccaccaacgcgtgaagca
gctgaaactctgttcgaaaacctcttcttctctgaagatcgttacgacctgtctgctgtt
ggccgtatgaagttcaaccgctctctgctgcgtgatgaaatcgaaggttcaggtatcctg
agcaaagacgacatcattcaggtaatgagaaaactgatcggtatccgtaacggtcagggc
gaagtggatgatatcgaccacttgggtaaccgtcgtattcgttctgtcggcgaaatggct
gaaaaccaattccgtgttggtttggttcgtgttgagcgtgccgttaaagagcgtctgtct
ctgggcgacctcgacactctgatgcctcaggacatgatcaacgctaagccgatttcggct
gcggtgaaagagttcttcggctcaagccagctttcacaatttatggaccagaacaacccg
ttgtctgagatcacgcacaaacgtcgtatctctgcactgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgacgcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactcattatctgtctatgcacag
acaaatgagtatggtttcctggaaaccccttaccgccgtgtgcgtgaaggtatggttacc
gatgaaattaactacctgtctgccatcgaagaaggcaactttgttatcgctcaggcgaac
tccaacctggatgacgaaggccacttcctggaagatttagtcacttgtcgtagcaaaggc
gaatcaagcctgttcagccgcgaccaggttgactacatggacgtttctacccagcagatc
gtatccgttggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttcctactctgcgtgctgataagccgctggta
ggtactggtatggaacgtgctgttgcggttgactccggtgttactgccgttgccaaacgt
ggtggtactgttcagtacgtggatgcatcccgtatcgttattcgtgttaacgaagaagag
atgaatccaggcgaagcaggtatcgacatttataacctgactaagtacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaatctgggcgagccaatcgagcgcggc
gacgtgctggcagatggtccgtcaacagatctgggcgaactggcactgggtcagaacatg
cgtgtcgcgttcatgccttggaacggttacaacttcgaagactccatcttggtctccgaa
cgtgttgtgcaggaagatcgcttcacgaccatccatatccaggaactggcatgtgtgtcc
cgtgacaccaagttagggcctgaagagatcactgctgatatccctaacgtgggtgaagct
gcgctctccaaactggatgagtccggtattgtgtatatcggtgctgaagtgaccggtggt
gacattctggtcggtaaagttacgcctaaaggcgaaacccagctgactccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagattcttctctgcgtgta
ccaaacggcgtttccggtacgattattgacgtgcaagtctttacccgcgatggcgtggaa
aaagataagcgtgcgttagaaatcgaagaaatgcagctgaaacaggctaagaaagacctg
actgaagagctgcaaattctggaagctggtctgtttgcacgtatccagtccgcgctggtt
gctggcggtgttgaagccgataagctgggcaaattgccacgcgatcgttggcttgaactg
tcactgactgacgaagataaacagaatcagttggaacagcttgctgaacagtacgacgaa
ctgaaatccgagtttgagaaaaaactcgaagctaaacgtcgtaaaatcactcagggcgat
gacctggcaccaggtgtgctgaaaatcgttaaagtgtatctggccgttaaacgtcagatc
caacctggtgacaaaatggcaggccgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacgggactcctgttgacatcgtactgaacccg
ctgggcgttccatcacgtatgaacattggtcagattttagaaacccacctgggtatggcc
gcgaaaggtattggtgaaaaaatcaatgccatgcttaagaaacatgaagaagtttctaag
ctgcgcgagttcatccagcgtgcctatgatctgggcgacgacgtacgtcagaaagttgat
ctgaccaccttcaccgatgatgaagtattgcgtttggctgaaaacctgaaaaagggtatg
ccaattgcaacaccagtcttcgacggtgcgaaagagacagagatcaagcaactgcttgaa
atgggcggcgtcccaacctctggccagatcacactgtttgacggccgtaccggcgagcaa
ttcgagcgccaggttaccgtcggctacatgtacatgctgaaactgaaccacctggttgac
gataagatgcatgcgcgttctaccggttcttacagccttgttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tacggtgctgcttataccctgcaggaaatgctgactgttaagtccgatgacgtgaacggc
cgtactaagatgtataaaaacatcgtagatggcgatcaccggatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctctctgggtatcaacatcgagctggaa
gacgagtaa
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integrated database retrieval system
