Rahnella inusitata: I2123_05270
Help
Entry
I2123_05270 CDS
T09790
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
riu
Rahnella inusitata
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
riu03009
]
I2123_05270 (rlmD)
Enzymes [BR:
riu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I2123_05270 (rlmD)
Ribosome biogenesis [BR:
riu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I2123_05270 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_15
Methyltransf_11
FtsJ
Methyltransf_23
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QUT16224
LinkDB
All DBs
Position
1124250..1125614
Genome browser
AA seq
454 aa
AA seq
DB search
MAQFYSPNRRVTTRQTITVTATDLDAFGQGVARHNGKAVFVSGLLPGEQAEVILTEDKSK
YAKGRLKRLLTTSADRVKPACPHYSTCGGCQQQHASEALQQRSKSASLLRLISRETGIQA
DEQPVIAGPQYGYRRRARLGLQIAGAKPGRKPGNGPLVMGFRQEGSNDLVAVTRCPVLRP
ELEQLLVPVQECLASLTAAKRLGHLEMVLADSGALLVLRHLDPLSEADRTRLTAFAQKHQ
LTIFLAPDSDTLERLCGDVPFYQIDGLALNFGPRDFIQVNDAVNQQMVAQALEWLALTPE
DRVLDLFCGMGNFTLPLAKRAKRVVGVEGVATLVANGQDNARINGLENASFFHENLEDDV
SQQPWAAQGFNKVLLDPARGGAAGVMAHIVKLAPQRVVYVSCNPTTLARDSKILLEAGYR
LAQVRMLDMFPHTGHLESMALFINPSDTGVVSDT
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggctcaattctactctccgaaccgccgtgtgacgacccggcaaacgataactgtgact
gccaccgaccttgatgctttcgggcagggtgttgcacgtcataacggcaaagccgtgttt
gtcagtggcttattgcccggcgagcaggcggaagtgatcttaacagaagataaaagtaag
tacgccaaagggcggctgaaacgtttgctgaccaccagcgccgatcgcgtcaaaccggcc
tgtccgcactattccacctgcggcggttgccagcaacagcacgccagtgaggcgttgcag
cagcgcagtaaatcggcgtccctgctgcggctgatttcccgtgaaaccggcattcaggct
gatgaacaacctgtgattgccggtccgcaatacggttatcgccgccgtgcgcgtcttgga
ttgcaaattgccggcgctaagccggggcgtaaacccggcaacgggccgctggtgatggga
ttccgacaggaaggttcgaacgatctggtggctgtcacccgctgtccggtgttgcgccct
gagctcgagcaactgctggtgccggtgcaggaatgtctggcctcgctgacggcggctaaa
cgccttgggcatctggaaatggtgctggcggacagcggtgccctgctggttttgcgccat
ctggatccgctcagcgaagccgatcgcacccgcctgacggcgtttgcgcaaaagcatcag
ttaacgatttttctggcacccgacagcgatacgctggaacgtttgtgtggcgacgtccct
ttttatcagattgatggcctggcgctgaatttcggtccgcgtgattttattcaggttaac
gatgccgtaaaccagcaaatggtggcgcaggcgctcgaatggctggcgctgacgccggaa
gaccgcgtgctggatttattctgcggaatgggaaatttcacccttccactggcaaaaaga
gctaagcgggttgtcggagttgaaggtgttgctacactggtggcgaatgggcaagataat
gcccggattaacggattagaaaatgcgtcattcttccacgaaaatctggaggacgacgtc
agtcagcaaccctgggcagcgcaaggcttcaataaagttttgctcgatcctgcgcggggc
ggtgcggccggcgtgatggcgcatattgttaagcttgccccgcagcgcgtggtgtatgtg
tcctgcaatcccacgacattggctcgggacagtaaaattttgttggaggcgggttatcgg
ttggctcaggttcgtatgctggatatgtttccgcacaccgggcaccttgaatcgatggct
ctgtttatcaacccatctgacaccggggttgtgtcagacacgtag
DBGET
integrated database retrieval system
