Rahnella inusitata: I2123_05915
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Entry
I2123_05915 CDS
T09790
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
riu
Rahnella inusitata
Pathway
riu03410
Base excision repair
riu03430
Mismatch repair
riu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I2123_05915 (recJ)
03430 Mismatch repair
I2123_05915 (recJ)
03440 Homologous recombination
I2123_05915 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
riu03400
]
I2123_05915 (recJ)
DNA repair and recombination proteins [BR:
riu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
I2123_05915 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
I2123_05915 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I2123_05915 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
DUF4180
Motif
Other DBs
NCBI-ProteinID:
QUT16339
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Position
1251174..1252907
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AA seq
577 aa
AA seq
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MTLQTQLRRREAATGVELPAELSPLLRRLYLSRGVKDSQELERSVRGMLPYQQLDGIDDA
VKLLQKALTERLRIIIVGDFDADGATSTALALLSLRSMGCGNIDFLVPNRFEDGYGLSPE
VVEQAASRGAELILTVDNGISSHAGVTLAHEKGIQVLVTDHHLPGETLPDAEAIINPNLH
GCAFPSKSLAGVGVAFYLMLALRGALRDSGWFEQNGITPPNLAEHLDLVALGTVADVVPL
DANNRIMVYQGLNRIRAGKCRPGIRALLEVAGREARTLGASDLGFALGPRLNAAGRLDDM
SVGVALLLTEDIGQARALASDLDALNQTRREIEQGMQVEALALCDKLERGTDALPFGLAM
YHPEWHQGVVGILASRLKERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNP
GLMMKFGGHAMAAGLSLEASKFDEFRDRFAELVGEWLDPSYLEGVVWSDGELAAQELTID
TAEMLRDGGPWGQSFPEPTFDGTFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPT
FWPDSSIREVQLAYRLDINEFRGNRSVQLIIQHLWPK
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaccttgcagactcaactacgccgccgtgaggccgcgaccggcgtggaactccccgcc
gaactttctccgttactacgccgtttgtatctctctcgtggggtgaaagacagtcaggaa
ctggagcgcagcgtgcgcggcatgctgccttatcagcaacttgatggcatcgatgacgct
gtgaaactgctgcaaaaagcgctcaccgagcggctgcgcattatcatcgtcggggatttt
gacgccgatggcgcgaccagcaccgcgctcgcgctgctctcgttgcgcagtatgggctgc
gggaatatcgattttttggtgcccaaccgttttgaagacggttatggcctgagcccggaa
gtggtggagcaggccgcttcccgcggtgccgagctgattctgaccgtcgataacggcatt
tcttcgcacgcgggcgtcacactggcgcacgagaaaggcattcaggtgctggtcactgac
caccatctgccgggcgagaccttgcccgatgctgaagcgatcattaacccgaatctgcac
ggttgcgcgtttccctccaaatcgctggcgggcgttggcgtggcgttttacctgatgctg
gcgctgcgcggtgcgcttcgcgacagcggctggttcgagcaaaacggcatcacgccgccg
aatctggcggaacatctggatctggtggcgctgggtaccgtggcagacgtggtaccgctc
gatgccaataaccgcatcatggtgtaccagggactgaaccgcattcgtgcgggcaaatgt
cgccccggtatacgcgcgctgctggaagtagcaggccgcgaagcccgcaccctgggcgcc
agcgatttaggttttgcgctcgggccacggctcaatgccgccgggcgacttgacgatatg
tctgtcggcgtggcgctgttgctcaccgaggacatcggacaggcgcgcgcgctggccagc
gatttagatgcgctgaaccagacccgccgcgagattgagcaggggatgcaggttgaggcg
ctggcgctgtgcgataaactcgagcgtggcaccgatgccttgccgttcgggctggcgatg
taccatccggaatggcatcagggcgtggtcggcatattggcttcgcgcctgaaagaacgt
tttaaccgcccggtgattgcattcgcaccggcgggcgaggggattcttaaaggttctggc
cgttcgattgccggtttgcatatgcgtgatgcgctggagcgtctcgacacgctcaatccc
ggcctgatgatgaaattcggcgggcacgccatggccgccggtttatcactcgaggcgtca
aagttcgatgaattccgtgaccgttttgctgaactggtgggcgaatggctggatccgtcg
tatctggaaggcgtggtgtggtcggacggtgaactggccgcgcaggaactgacgattgat
accgctgaaatgctgcgtgacggcggcccgtgggggcagtcgttccccgaaccgacgttt
gatggcacgttccggatcctgcaacaaaagctgctgaaagagcgtcatctgaaactgatg
attgaaccggttggcggcggaccgctgcttgacggcatcgcgtttaatatcgatccgacg
ttctggcctgacagcagcatccgcgaagtgcaactggcctaccggctggatatcaatgaa
ttccgtggaaatcgcagcgttcagctgatcattcaacatttgtggccgaaataa
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