Rahnella inusitata: I2123_06975
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Entry
I2123_06975 CDS
T09790
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
riu
Rahnella inusitata
Pathway
riu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I2123_06975 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
riu03400
]
I2123_06975 (recB)
Enzymes [BR:
riu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I2123_06975 (recB)
DNA repair and recombination proteins [BR:
riu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I2123_06975 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QUT16525
LinkDB
All DBs
Position
1477563..1481276
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AA seq
1237 aa
AA seq
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MTDRTVPSALNVLNFPLTGSRLIEASAGTGKTFTIAALYVRLVLGHGGDNAFSRPLTPPE
ILVVTFTDAATKELRDRIRVRLSQAAEYFLNLDGSSSEGDEFLQTLRAEYLPEQWPGCAR
KLQLAAEWMDESAVSTIHGWCNRMLGEHAFDSDSLFTQTLETDQTELLMEVVRDYWRSFY
FALPESDIRTLRAWWRTPEELHSKVAPLLEYAEELGSDETPAQICETVRQQKAAELSALK
QGWPEWTQELRTLLEGAVAAKVVDGRKIQARYFLPWLEKLHIWATTDDLTPDLKTGWERL
TPQGLAECWKQGEPPAHPAITAMETLKTQLENLPDARSGLLQHACRWIENRFDIEQQKRA
QMGFNDLLTRLDDALRSDNGERLAEIVRTQFPVAMIDEFQDTDPLQYRIFDTVYRVAKNA
PEQGLILIGDPKQAIYAFRGADIYTYLRARRDTGGRHYTLATNFRSTRSMVAAVNEVFGL
AENRDSGEGAFLFRRGDENQVPFLPVEAKGRADTLIIDDAEAAAMTLWYPENQADALPKT
QYIQLMSDGCATEIVRLLRLGQQGSAGFGQSGETLQPVMPGDIAVLVNTGREATAVRTAL
SKRGVRSVYLSDKESIFQSAQAGELQYWLAACAAPENDRLLRAALGTPSLNLSWEALDRL
NQDEQEWDRYVRQFQEYRICWRKQGILPMLRRLMWEFDVPRRLLGRGDERALTDLLHLSE
LLQQASVQLDGEHALIRYLAEQRQDEHQGGDARKLRLESDAELVKVVTVHKSKGLEYPLV
FLPFACAFRAVKKQDSPLKWHTPEGELEVALSASDDQLALADRERLGEDLRKFYVALTRS
RYALWLGMAPLKEFEKSAPGYLFHQDSVPDGETFEAGALPARLQALETTNIRAWPLPAPD
GAVFRNEQALPALGPRPPLRTHKAPRWWVSSFSGLQIAPAGTYIAADVVTRELPVEIESA
AQDTYLENKSLENTGLEAIGAPESVSSPMTGADLYAFPRGPAPGNFLHGLLEWAGDEGFA
ALTSKPEKIADQVARRCNTRGWEKWITPLTEWLTALLTQPLPLPDGDTFTLAGLPPYQVE
MEFWFSLTQVSTRRLDKLVSQYTLDGAARAPLLAEDLNGMLKGFIDLVFEHDGRYYVLDY
KSNWLGGDASGYDPVSMTQSMLDHRYDLQFTLYLFALHRLLKSRLADYDYDRHIGGAVYL
FLRGSHATGNGVCVQRPDKALMEQLDLLFSGDQEKRA
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgacggatcgcactgtgccctcggccctgaatgtactgaattttccgctgaccggcagc
cgcctgattgaagccagcgccggtaccgggaaaacttttaccatcgccgcgctgtacgtg
cggctggtgctcggccacggcggtgataacgcttttagtcgcccgctgacgccgccggaa
attctggtggtgaccttcaccgatgcggccaccaaagagttgcgcgaccgtatccgtgtg
cgtctgtcgcaggccgcagaatactttttaaatctggacggatcctcttctgagggcgac
gaatttttgcagacgttgcgcgctgaatatcttcctgaacagtggccgggatgcgcccgc
aagctgcaactggcggcggaatggatggatgaatcggcggtctccaccatccacggctgg
tgtaaccgcatgctcggcgagcacgcattcgacagcgacagcctgttcactcagacgctg
gaaaccgatcaaacggaactgctgatggaagtggtgcgcgactactggcgcagcttctat
ttcgcattgccggaatctgatatccgcaccctgcgcgcatggtggcggacgccggaagag
ttacacagcaaggttgcgccgctgctggaatacgccgaagaactgggctcagacgaaacg
cctgcgcagatctgcgaaacggtcaggcagcagaaagccgcagagttgtcggcgctgaaa
cagggctggccggaatggacgcaggaactgcgcaccctcctcgaaggcgcggtggcagcg
aaagtggtggatggccgtaaaattcaggcgcggtattttctgccgtggctggagaaactg
cacatctgggcgaccacggatgacctgacgccagatctgaaaaccggctgggaacgcctg
acaccgcaaggcttagcggaatgctggaagcagggcgaaccccctgcgcatccggcgatc
accgccatggaaaccctgaaaacgcagctggaaaatctgccggatgcccgcagcggtttg
ctgcaacacgcctgccgctggatagaaaaccgcttcgacatcgagcagcaaaagcgcgca
cagatgggtttcaacgatttactgacccgcctcgacgacgcgctgcgcagcgacaatggc
gaacgattggcggagatcgttcgcacccagttccctgtggcgatgatcgacgaatttcag
gacacagatccgctgcaatatcgcattttcgataccgtttatcgcgtggcgaaaaacgca
ccggagcaagggctgatcctgatcggcgatccgaaacaggcgatttatgccttccgcggc
gctgatatttatacctatctgcgtgcccgccgcgatacgggcggacggcactacacgctg
gcgaccaacttccgttccacacgcagcatggtggcggcggtcaatgaagtctttgggctt
gccgaaaaccgcgattctggcgagggcgcttttttgttccgccggggcgatgaaaatcag
gtgccgttcctgccggtggaagccaaagggcgcgctgacacgctgataattgatgatgct
gaagccgccgcgatgacgctgtggtatccggaaaatcaggccgacgcgctgccgaaaacg
cagtatatccagctgatgtccgacggctgtgcgacggaaatcgtccgtctgctgcgcctc
gggcagcagggttctgccggtttcggccagtctggcgaaacgctgcaaccggtgatgccg
ggcgatattgcggtgctggtgaatactggccgtgaagccacggctgtccgcacggcgctg
tccaaacgtggggttcgcagcgtttatctgtctgacaaagaatcgatatttcaaagtgcg
caggcaggcgaattgcagtactggctggcggcctgcgctgcgccggaaaacgatcgtctg
ctgcgcgccgcgctcggcacgccgtcactcaatttaagctgggaagcgctcgatcgcctc
aatcaggacgagcaggagtgggatcgctacgttcgtcagttccaggagtaccgcatttgc
tggcgcaaacagggcattttgcccatgctgcgtcgcctgatgtgggaatttgatgtgccg
cgtcgcctgcttggacgcggggatgaacgtgcgctgaccgatctgctgcatctgtccgaa
ctgctgcaacaggccagcgttcagcttgacggcgaacacgcgctgatccgctatctggcg
gagcagcgtcaggacgaacatcagggcggcgacgcgcgaaaactccgtctggaaagcgat
gccgaactggtgaaagtggtgacggtgcataaatccaaagggctggaatatccgctggtg
ttcctgccctttgcctgcgccttccgcgcggtgaaaaaacaggactctccgctgaaatgg
cacacgccggagggcgagctggaagtggcgttaagcgccagcgacgatcagctggcgctc
gcagaccgcgaacgtctgggggaagatctgcgtaagttttacgtcgcgctgacccgctcg
cgttacgcgctatggctcggcatggcgccgctgaaagagtttgagaaaagtgcgcccggc
tatttatttcatcaggacagcgtccccgacggagaaaccttcgaggccggtgcgctgcct
gcccgtttacaggcgctggaaacgacgaatatccgcgcatggccgctgcctgcgccggac
ggagcggtgttccgtaatgaacaggcgctgcctgcgctcggaccacgcccgccgctgcgc
acgcacaaagcaccgcgctggtgggtgtcgagtttttccggcctgcaaatcgccccggcc
gggacctatatcgccgccgatgttgtgacgcgtgaactgccggtggaaatcgaaagcgcc
gcgcaggatacctatcttgaaaataagagtttagagaatacgggtctggaagcgatcgga
gcgccggaaagtgtatcgtcgccgatgaccggcgcggatctgtatgcgtttccgcgcggt
ccggcaccgggtaatttcctgcacggtttgctggaatgggcgggagacgaagggtttgcc
gcactgacgtcgaagccggaaaaaatcgccgatcaggtagcgcggcgctgtaatacgcgc
ggctgggaaaaatggattacgccgctgacggaatggctgaccgcgttgctgacgcagccg
ttaccgctgccggacggcgacacatttacgctggccgggctgccgccgtatcaggtggaa
atggagttctggttctcgctgacgcaggtatcgacccgccgcctcgacaagctggtgtcg
cagtacacgctggacggcgccgcacgcgcgccgctgctggcggaagacctcaacggcatg
ctgaaaggctttatcgatctggtgttcgaacacgacgggcgttattacgtgcttgattac
aaatccaactggctgggcggcgacgccagcggctatgacccggtctccatgacgcagtcg
atgctggatcatcgctacgatctgcaatttacgctgtatctgttcgcgctgcatcggttg
ctgaaatcccgtctggcggattatgactacgacagacatatcggcggcgcagtgtattta
tttctgcgcggcagccatgcgacgggcaacggcgtctgcgttcagaggccggataaagcc
ttaatggaacaactcgacctgctgtttagcggtgatcaggagaaacgcgcatga
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