Rahnella inusitata: I2123_08600
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Entry
I2123_08600 CDS
T09790
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
riu
Rahnella inusitata
Pathway
riu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I2123_08600 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
riu03019
]
I2123_08600 (rhlE)
Enzymes [BR:
riu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I2123_08600 (rhlE)
Messenger RNA biogenesis [BR:
riu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I2123_08600 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Shikimate_DH
UvrD-helicase
DUF6256
DUF5693
Motif
Other DBs
NCBI-ProteinID:
QUT16822
LinkDB
All DBs
Position
1846710..1848107
Genome browser
AA seq
465 aa
AA seq
DB search
MSFDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL
NMLSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSMVVFGGVSINPQML
KLRGGVDVLIATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLTNPASVEVARRNTASEQIDQTVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVRVLV
ATDIAARGLDIDMLPHVVNYELPNVPEDYVHRIGRTGRAEATGEAVSLVCVDEHKLLRDI
ERLLKREIPRVALPGYEPDPSIKAEPIINGRQGSGGGGRGAPRQGQRPGAPRTGAPRSGA
PRPGGSSAARSGTSENRGTGENRPARARPAHAGQRRSGPAGSGNK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattccctcggcttaagtgccgaaattttgcgtgctgttgaagaacagggc
tatcgcgaacctacgcctatccaacgccaggcaatccctgtcgtgttgcaaggtcgtgac
ctgatggcgagcgcgcagaccggtaccggtaaaaccgctggttttaccctgccgctgctg
aatatgctcagccataccaatgcgcaattcaaaggacgtcgcccggttcgtgcgctgatc
ctgaccccaacccgcgaacttgcggcacaaatcggcgaaaacgttcaggcttacagcaag
tacctgaccttacgttcgatggtggtgtttggcggtgtgagcatcaacccgcagatgttg
aaactgcgcggtggtgtggatgtcctgatcgcaacgcctggccgtttgcttgatctggaa
catcagcgtgctgttgatttatcccaggttgaaattttagtgcttgatgaagctgaccgc
atgctcgacatgggcttcatccacgacatccgtcgcgtgctggcgaaactgcctgccaag
cgtcagaatctgctgttctccgcgaccttctctgatgagatcaaaggtctggcgagcaag
ttgctgactaacccggcttctgtggaagtcgcgcgtcgcaacaccgcgtctgagcaaatt
gatcagaccgttcactttgttgataaaaaacgtaaaagagaactgctgtcccagatgatc
ggtgaaggcgactggaaacaggtgctggtgttcaaccgtaccaaacacggcgcgaaccat
ctggctgagcagctgaataaagacggcatcaccgccgccgctattcacggcaataaaagt
cagggcgcgcgtacccgtgcactggccgatttcaaagccggttcagtccgcgtactggtt
gcgaccgatattgccgcgcgcggtctggatatcgatatgctgccgcacgtcgtgaactac
gaactgccaaacgtaccggaagattacgttcaccgtatcggccgtactggccgtgcagaa
gcgaccggtgaagcggtttctctggtgtgcgtagatgaacacaaactgctgcgtgacatc
gagcgtctgcttaagcgtgaaattccacgcgttgcattgccgggttacgagccagatcca
agcatcaaagcagaacctattatcaatggtcgtcagggtagcggcggcggcggtcgtggt
gctccacgtcagggccagcgtccgggcgcaccgcgcaccggtgctccacgttctggcgct
ccgcgtccgggcggcagcagtgcagcgcgcagcgggacttctgaaaaccgtggtaccggt
gaaaaccgtccagcccgcgcgcgacctgctcatgcaggccagcgtcgcagcggtcctgcg
ggcagcggcaacaagtaa
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