Rahnella inusitata: I2123_09425
Help
Entry
I2123_09425 CDS
T09790
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
riu
Rahnella inusitata
Pathway
riu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I2123_09425 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
riu03019
]
I2123_09425 (rne)
03009 Ribosome biogenesis [BR:
riu03009
]
I2123_09425 (rne)
Enzymes [BR:
riu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I2123_09425 (rne)
Messenger RNA biogenesis [BR:
riu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I2123_09425 (rne)
Ribosome biogenesis [BR:
riu03009
]
Prokaryotic type
rRNA processing factors
I2123_09425 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QUT16974
LinkDB
All DBs
Position
complement(2014383..2017709)
Genome browser
AA seq
1108 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLTFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESTHHICPRCAGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYHVLRVRKGEEISALSYLLPQIHEAEMLQPSEEVPSERRRPEQPALAAFALQGEAPP
SGFEQTSAPEEPVQTRTTTVNAPAAPVAEKPGFVSRLLSGLKGLFAPEPQQEVKPVEVPK
AETETTEAAETRRNNDRRNQRRQGGRRDRNGERGERTDRGNRGEGRDNNRDNRGESRDTR
ENNREPREDQRRNRRNPEPVVAEARIEEVETVARDEQQQQPRRERSRRRSDDKRRTQPEE
KVQDVVVQEIAAPVVSAPVVQEDADQEDRQPAQRRQRRQLTQKVRFESEEVDHEAEAAAQ
LLITGSRPAERPVEPAFTSHEEAGAETNYSADNDDNQNDNARENGMPRRSRRSPRHLRVS
GQRRRRYRDERYPTQSPMPMAGAFVSPEMASGKVWITYPVAQAYEQHVNETEAPEVLAQQ
VEIALENTPVLNETTEAAPQTVVETPVNEPAKVEPEAVVTEVAPQETPVEAAPEVAAQPV
ADEPVLVEPETSEPVEETPVVAVAPKAQEPIVVEPVTVIAEPEIQIQAPVAAPEAEVKAE
PVAQVQPVVEAASVAETAISTEAAAPRFKLHATAPMTKAPAPAYVQEPARHSDWVRPEFD
FEGKGSAGGHAAVSTATAPATKPEMPSE
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgcgttgcccttgtagat
ggacagcgtctgtatgatttggatattgaaagtccgggccatgagcagaaaaaagcgaat
atttacaaaggtaaaatcacccgcattgaacctagtctggaagcggcattcgtagattac
ggcgcagaacgacacggtttccttcctctgaaagaaatttcccgcgaatatttccctagc
aattattcctcacatggccgcccgaacatcaaagatgttttgcgcgaaggtcaggaagtg
atcgttcaggttgataaagaagaacgcggaaacaaaggcgcagcgctgacgacgtttatc
agcctagccggtagctatctggttctgatgccaaacaatccacgtgctgggggtatttcc
cgccggattgaaggtgatgaccgcactgaattaaaagaagcgttatcttctctgcaattg
cctgatggcatgggcctgattgtgcgtactgccggcgtcggtaaatccgcagaagccctg
cagtgggacctgaccttccgccttaagcattgggatgccatcaagaaagccgcagaaggc
cgcccagcacccttcctgattcatcaggaaagtaacgttatcgttcgtgcgtttcgtgat
tacctgcgcccggacatcggtgaaatcctcatcgataacccaaaagttctcgaactggcg
aaagagcacattgccgctctgggccgtccggacttcagcagcaaaattaagccttatgtt
ggcgaaataccgctgtttagccattaccagattgaatcccagattgaatctgcattccag
cgtgaagtgcgtctgccttccggtggctcgattgtcatcgatagcactgaagctctgact
gctatcgacatcaactccgcgcgtgcaacccgcggcggcgatatcgaagaaaccgctttt
aataccaacctggaagccgcagacgaaattgcccgccagttacgcctgcgtgacttgggt
ggcctgatcgttattgacttcatcgatatgacacctgtgcgtcatcagcgtgaagttgaa
aaccgtctgcgtgatgcagttcgtcaggaccgtgcacgtattcaaatcggccgcatctcc
cgctttggtctgcttgaaatgtcccgtcaacgcctcagcccgtcactgggtgagtcaacg
caccatatctgcccacgctgcgccggtaccggtacagtgcgcgataacgaatcgctgtcc
ctgtcgattctgcgtctgattgaagaagaagcgctgaaagaaaacaccaaagaagtccat
gcgattgtgccagtacctattgcctcttacctgctgaacgaaaaacgtgaatcggtgaat
gccatcgaaaaacgtcagggtggcgtgcgcgcagtgatcgtaccaaacgatcagatgcaa
actccgcactaccacgttctgcgtgtacgcaaaggcgaagaaatttctgcactgagctac
ctgcttccgcagattcacgaagccgaaatgctgcaaccttctgaggaagtgccgtctgaa
cgccgtcgccctgagcaaccggccctcgccgcgtttgccctgcaaggcgaagcgccacca
tcaggctttgaacaaacctctgctcctgaagagccagttcagacacgcaccacaacagtc
aatgcacctgctgcgcctgttgctgagaaaccagggtttgtcagccgtctgttgagcggt
ctgaaaggcttgttcgcaccggaacctcagcaggaagttaaacctgttgaagtgcctaaa
gctgaaacagaaaccactgaagccgcggaaacccgtcgcaacaacgatcgccgcaatcag
cgtcgtcagggcggacgtcgtgatcgcaatggcgaacgcggtgagcgcaccgatcgtggt
aatcgtggtgaaggccgtgataacaatcgtgacaatcgtggcgaaagccgtgacactcgc
gaaaataaccgcgaaccgcgtgaagatcaacgccgtaaccgtcgtaatccggaaccggtt
gttgctgaagcccgcatcgaagaagttgaaactgtcgcccgtgatgagcagcagcaacaa
cctcgccgtgagcgctcccgtcgccgttctgatgacaaacgcagaacacagccggaagag
aaagttcaggatgttgtggttcaggaaattgccgcgccggtggtctccgcacctgttgta
caagaagatgccgaccaggaagatcgtcagcctgctcaacgccgtcagcgtcgccagtta
acgcaaaaagtacgcttcgaatcagaagaagtggatcacgaagctgaagctgctgcgcaa
ttgctgattaccggtagtcgcccggctgaacgccctgttgagcctgccttcacttcccat
gaagaagccggtgctgaaacgaattactcagcagataacgatgacaaccagaatgacaac
gcccgtgaaaacggtatgccacgtcgttcacgtcgttcgccgcgtcacctgcgcgtcagc
ggtcaacgtcgtcgtcgctaccgcgatgagcgttatccgacccaatcaccaatgccaatg
gctggtgctttcgtttctccggaaatggcatctggtaaagtctggatcacctacccggtt
gctcaggcttatgaacagcatgtgaatgagaccgaagcgccagaagtgcttgctcagcaa
gttgaaatcgcgctggaaaatactcctgtgttgaatgaaacgaccgaagctgcacctcag
actgttgtggaaacgccggttaatgaaccagcgaaagttgagccagaagctgttgttaca
gaagttgcgccgcaagaaacacctgtagaagcggcacctgaagttgctgcacagcctgtt
gccgatgagcctgttctggttgaaccagaaacatctgaaccggtagaggaaaccccagtg
gttgctgttgcaccgaaagcgcaagagccgattgttgtggaacctgtcactgttatcgct
gaaccagaaattcagattcaggcaccggtagcggctccagaggctgaagtgaaggctgaa
cctgtagcacaagttcaaccggttgtggaagctgcgtcagttgcggaaacggcgatcagc
actgaagcggctgcaccgcgcttcaaactgcatgctacagcaccgatgaccaaagcacct
gcgccagcttacgtgcaagagccggctcgtcacagcgactgggttcgccctgagtttgac
tttgagggtaaaggttctgcaggtggtcatgccgccgtcagcacggctaccgcaccggca
acaaaacctgaaatgccatcagagtaa
DBGET
integrated database retrieval system
