Rahnella inusitata: I2123_09575
Help
Entry
I2123_09575 CDS
T09790
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
riu
Rahnella inusitata
Pathway
riu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I2123_09575 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
riu03400
]
I2123_09575 (mfd)
Enzymes [BR:
riu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I2123_09575 (mfd)
DNA repair and recombination proteins [BR:
riu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I2123_09575 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF6007
OAR
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUT17002
LinkDB
All DBs
Position
complement(2045628..2049071)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSQDYRYSLPERPGDTRLLGQLTGSACALECAQISERHAGPVMLIAPDMQNALRLRDEIQ
QFTDHKVLSISDWETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLMQRVCPH
EFLHGHALVMKKGQLLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSDEPF
RIDFFDDEIDSLRTFDVDTQRTLSEVDQINLLPAHEFPTDKNAIELFRSQWREKFEVRRD
AEHVYQQVSKGTFPAGIEYWQPLFFSQPLTTLFSYLPENTLVLNTGDLETAAERFWQDAT
QRYESRRVDPMRPLLEPENLWLRVDMLFAELKAWPRVQLRTDSLPKKAANTNLSYETLPD
LSVQPQNKAPMDNLRRFNESFAGSLVFSVESEGRRETLQDLLARIKLMPTLITRIEEAEF
AGRYIMIGACERGFLDADKQLALICESDLLGERVARRRQDSRRTINTDTLIRNLAELRPG
QPVVHVEHGVGRYLGLTTLETGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADDSA
PLHKLGGEAWSKARQKAAEKVRDVAAELLDIYAQREAKTGFAFKHDKEQYQLFCQAFPFE
TTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTL
LAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQQAVIEEAVEGKVDIIIGTHKLLQSDLRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRMAVKTFVREYDSLVIREAILREILRGGQVYYLFNDVENIEKATQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSVDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMTSIGFTLYMELLENAVEALKEGREPSLEDLTTSQTEVEMRMPALLPEEFIPDV
NTRLSLYKRIASAKSENELDELRVELIDRFGSLPDGARNLIQIAVLRLKAKELGIKRIEG
NERGGFIEFGDKNRVDPGHLIGLLQKQPQVYRLDGPTKLKFMLDLTDRPKRLKFVSDMLA
DFAEHLI
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagattatcgttattcattgcctgaacgccccggcgacacccgtcttttaggg
cagcttaccggctccgcctgtgcactcgaatgtgcacaaatcagtgagcgtcacgcaggc
cccgtcatgctgatagcaccggatatgcaaaatgccctgcgtttgcgcgatgaaattcag
cagtttaccgatcacaaagtgctgagcatttctgactgggaaacactgccgtacgacagt
ttctcgccgcatcaggaaatcatttcttcccgtctttccagcctttatcaacttcccacg
atggaacgcggcatcattattctgccggtgaatacgttgatgcaacgtgtctgcccgcac
gagtttttgcacggccatgcgctggtgatgaaaaaaggccagctgctgtcacgcgacaaa
ctgcgtgctcaactggaacaggccggttaccgcagcgtcgatcaggtcatggagcacggt
gagtttgccacccgtggcgccctgctcgacctgtatccgatgggcagcgacgagcctttc
cgtatagatttcttcgatgatgaaatcgatagcctgcgcacctttgacgtcgatacgcag
cgtacgctgagcgaagtcgatcagatcaatttgctgcccgcgcacgaattcccgaccgac
aaaaatgccatcgaacttttccgcagccagtggcgcgagaagtttgaagttcgccgcgac
gctgaacacgtttatcagcaggtgagtaaagggaccttcccggccgggatcgaatactgg
cagccgctgtttttcagtcaaccgctgaccacgctgttcagctatctgccggaaaatacg
ctggtgctcaataccggcgatctggaaaccgccgccgagcgtttctggcaggatgccact
cagcgctacgaaagccgccgcgtggatccgatgcgtccgctgcttgagccggaaaacctg
tggctgcgggtcgatatgctgttcgctgaactcaaagcctggccacgcgtccagctgcgc
actgactcgctaccgaagaaagctgcaaacactaatctcagctacgaaaccttgccggat
ctctccgtgcagccgcaaaacaaagcgccaatggataacctgcgccgctttaacgaatcc
tttgccggcagtctggtgttctcggttgaaagtgaaggccgtcgcgaaacgttgcaggat
ttactggcgcgcatcaagctgatgccgacgctcattacccgcatcgaagaagccgaattc
gccggacgttacatcatgatcggcgcctgtgagcgcggattccttgatgccgataaacag
ctggctctgatttgcgaaagcgatctgctgggtgagcgcgtggcgcgacgccgtcaggac
agtcgccgcaccattaataccgacacgctgatccgtaacctcgccgagctgcgccccggc
cagccggtggttcacgtcgaacacggcgttggccgctatctgggcctcaccacgctcgag
accggtggtattaaagctgagtacctgatcctgacctacgccggtgaagataaactttat
gtgccggtatcgtcactgcatcttatcagccgctacgccggcggtgccgatgacagcgcg
ccgctgcacaaactcggcggtgaggcatggtcgaaagcccgtcagaaagccgctgagaag
gtccgcgacgtggccgccgagctgctggatatttacgcccagcgcgaagccaaaaccggt
tttgcgtttaagcatgacaaagagcaataccagctgttctgtcaggctttcccgtttgaa
accacgccggatcaagcgcaggccatcaatgccgtactgactgacatgactcaaccgctg
gcgatggaccggctggtgtgtggtgacgttggctttggtaaaaccgaagtggcaatgcgc
gctgcgttccttgccgtcgccaacaacaaacaggtggcggttctggtgccaaccactttg
ctggcacagcagcatttcgacaacttccgcgaccgttttgccagctggccggtgcgcatc
gaaatgatgtcgcgtttccgcagcgccaaagagcaacaggcggtgattgaggaagcggtc
gaaggcaaagtcgatattattatcggcacacataaactgctgcaaagtgacctgcgctgg
aaagatctcggcctgctgattgtcgatgaagaacaccgtttcggcgtgcgtcataaagag
cgtattaaagcgatgcgcgctgacgtggatatcctgacgctgaccgccacaccgatcccg
cgcacgctgaatatggcgatgagcggcatgcgcgacctgtcgattatcgccacgccgccc
gcacgccgtatggcggtcaaaacctttgtccgcgaatacgacagcctggtgatacgcgag
gccatcctgcgtgaaattctgcgcggcgggcaggtttattacttattcaacgatgtcgaa
aacatcgagaaagccacgcagcgcctggcagagctggtgccggaggcgcgtattgccatc
ggccacggccagatgcgcgagcgcgatcttgaacgggtgatgaatgattttcaccatcag
cgttttaacgtactggtgtgtaccacgatcattgaaaccggtatcgacattccgacggcc
aacaccatcatcattgagcgcgccgatcactttggtctggcgcagttgcaccagctgcgc
ggtcgcgtcgggcgttcgcatcatcaggcctacgcttatctgctgacgccgccgccgaaa
gccatgtccgtcgatgcgcataaacgcctcgaagctattgcttcgctcgaagatctgggt
gccggttttgcgctggcgacgcacgaccttgaaattcgtggcgcaggcgaactgctgggc
gaaggccagagtgggcagatgaccagcatcggtttcacgctgtatatggagctgctggaa
aacgccgtcgaagcgctgaaagaaggtcgcgagccatcgcttgaggatctgaccaccagt
cagaccgaagtcgaaatgcgcatgcctgccctgctgccggaagaattcattcctgacgtc
aatacacgcctgtcgctgtataaacgcatcgccagtgcgaaaagcgaaaatgagctggac
gagctgcgcgtggagcttatcgaccgcttcggatcgctgccggacggtgcgcgcaatctg
attcagatagccgtgctgcgacttaaggcgaaggaactgggcatcaaacgcattgaaggc
aatgagcgcggcggctttatcgagttcggcgataaaaatcgcgtcgatccgggccacctg
attggtttgctgcaaaaacagccgcaggtttaccgcctcgacggcccgaccaaactcaag
ttcatgctggacctgaccgatcggccaaaacgcctgaaatttgtcagcgatatgttggca
gattttgctgagcatttgatctga
DBGET
integrated database retrieval system
