Rahnella inusitata: I2123_12485
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Entry
I2123_12485 CDS
T09790
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
riu
Rahnella inusitata
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
riu03019
]
I2123_12485 (hrpA)
Enzymes [BR:
riu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I2123_12485 (hrpA)
Messenger RNA biogenesis [BR:
riu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I2123_12485 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
NACHT
PhoH
ResIII
T2SSE
NTPase_1
SLFN-g3_helicase
DUF3047
AAA_16
SIMPL
AAA_30
TsaE
Motif
Other DBs
NCBI-ProteinID:
QUT13553
LinkDB
All DBs
Position
2653264..2657151
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLAALSAQLDGLMLRDRQRLQRRLQGAKKTFNDNANPQATDALSAEIQAAIDESRKK
VSSREASRPKISYPENLPVSQKKEDIFNAIRDHQVVIVAGETGSGKTTQIPKICMELGRG
IKGVIGHTQPRRLAARTVANRIADELDTTMGNTVGYKVRFNDQVSENTLVKLMTDGILLA
EIQQDRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRH
FNNAPIIEVSGRTYPVDVRYRPIVDDADDTDRDQLQAIFDAVDELGRESMGDILIFMSGE
REIRDTADALNRLALPHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEMDFLSR
PEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELNAINNAVD
GRYSLTPLGRQLAQLPVDPRLARMVLEAQKNGCVREVMIITSALSIQDPRERPMDKQQAS
DEKHRRFADKDSDFQAFVNLWNYLKEQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQL
RQVVKELGLRINSEPADYRSVHCALLTGLLSHIGQKDADKQEYTGARNARFAVFPGSGLF
KKPPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLAKSSYSEPHWEKAQGAVMATEK
VTLYGLPIVAARSVNYGTIDPVVSRELFIRHALVEGDWQTRHAFFRANLRLRSEVEELEH
KSRRRDILVDEETLFLFYEQRVGSDVVSGRHFDTWWKTQPQDSLNFEKSMLIKEGAGNIS
AHDYPNFWHQGNIKLRVTYQFEPGTDADGVTVHIPLPLLNQVSEEGFDWQIPGIRRELIM
ALIKSLPKPLRRNFVPAPNYADALMGRIKPFEMPLLDAMERELRKMSGVTLSREDWQLDQ
VPDHLKMTFRIVDDKNKTLREGKDLTALKSGLKEQVQQTLSAVADDGIEQRDLHVWSFGT
LPERYEQKRGGYEVKAYPAIVDEKDSIAIRLFDSELEQQQAMWGGMRRLLLLNIPSPIKY
LHDKLPNKAKLGLYFNPYGKVLDLIDDCISCGIDKLIAESGGLVWREEDFAKLHEHVRAN
LNDAVVQIAIQVEQILTTVFNINKRLKGRIDITMALALSDIKSQMSGLIYRGFVTQNGWK
RLPDTLRYLHAIERRMDKLAMDPHRDRAQMLKVESIQKQWQQWLNKLPPVRQQSEDVKEV
RWMIEELRVSYFAQQLGTPYPISDKRISQTMEQLV
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaccgctcgcggcattatcagcgcagttagacgggctgatgctacgtgaccgg
caacgtctgcaacgtcgtttgcagggtgccaaaaagacctttaatgacaacgctaatcct
caggcgactgatgcgctcagcgcagaaattcaggctgcaatcgacgaaagccgtaaaaaa
gtcagctcacgtgaagcgtcacgaccaaaaatcagctatccggaaaatttgccggtcagt
caaaagaaagaagacatcttcaacgccatccgtgaccatcaggtcgtgatcgttgcgggt
gaaaccggctcgggtaaaaccacgcagatcccaaaaatctgtatggaattagggcgcggt
atcaaaggcgtgatcggccatacgcagccgcgtcgtctggcagcgcgtaccgttgccaac
cgtattgccgatgagctcgataccacaatgggtaacaccgttggctataaggtccgcttt
aacgatcaggtcagcgagaatacgctggttaagctgatgactgacggtattctgctggct
gaaattcagcaggatcgcatgctgatgcagtacgacacgctgatcatcgatgaagcgcat
gaacgtagtctgaacatcgattttatcctcggttatctgcgccagctgttgccaaaacgc
ccggatctgaaagtcatcattacgtcggcgaccatcgatccgcagcgcttctcgcgccat
ttcaacaacgcgccgatcattgaagtatcgggccgcacatatccggtcgacgtgcgttat
cgcccgattgtcgatgacgccgatgacacagaccgtgaccagctacaggcgatttttgac
gcagtcgatgagcttggccgcgaaagtatgggcgatatcctgattttcatgagcggtgag
cgcgaaatccgtgataccgccgatgcgctgaaccgtctggcattgccgcacacggagatc
ctgccgctgtatgcccgattgtcgaacagcgagcagaaccgtgtgttccagtcgcattct
ggccgccgtatcgtgctggcgaccaacgtggcagaaacctcactgacggtgccgggcatc
aaatacgtcatcgatcccggcaccgcccgcatcagccggtacagcttccgcaccaaagtg
cagcgcctgccgatcgagccggtatctcaggcttccgccaaccagcgtaaaggccgttgc
ggccgtgtttctgaagggatctgtatccgtctttattcagagatggatttcctttcgcgc
cctgaatttaccgatccggaaattctgcgcacgaatctggcgtctgtcattttacagatg
acgtcactggggctgggcgatatcgccgcgttcccgttcgtcgaagcgccagataaacgc
aatattcaggacggcgtacgtctgctcgaagagctgaacgctatcaataacgccgtggat
ggccgctattctctgacgccacttggccgccagctggcccagttgccggtggatccacgt
ctggcacgcatggtgctggaagcgcagaaaaacggctgcgtacgcgaagtcatgatcatt
acttcggcgttgtcgattcaggatccgcgcgagcgtccgatggacaaacagcaggcgtcc
gatgagaaacatcgccgctttgccgataaagactctgacttccaggcgttcgtgaatttg
tggaactacctgaaagaacagcaaaaagaactgagctcggcgcaatttcgcaagctctgc
cgcagcgattttcttaactatctgcgcgtgcgcgaatggcaggatatctacacccagctg
cgtcaggtagtgaaagaactcggcctgcggatcaacagtgaaccggcggattatcgcagt
gttcactgcgcgctgctgaccggtttgctgtcgcacattggccagaaagacgcggataaa
caggaatataccggcgcccgtaatgcccgcttcgcggtgttccctggctccggtttattt
aagaaaccgccaaaatgggtgatggtcgccgaactggtggaaaccagccgcctgtggggg
cgtatcgccgcgcgtatcgaaccggaatggatcgaaccgctggcgcagcatctggcgaaa
agcagttacagcgaaccgcactgggaaaaagcgcagggcgcggtgatggcgaccgaaaaa
gtcacgctgtacggcctgccgattgtcgcggcgcgcagcgttaactatggcaccatcgat
ccggtcgtgtcgcgcgagctgtttatccgtcatgcactggtggaaggtgactggcaaacg
cgtcacgcattctttcgcgccaacctgcgtttacgcagtgaagtcgaggagctggaacac
aaatcccgccgacgcgatattctggtggacgaagaaacgctgttcctgttctacgaacag
cgcgtcggctcggacgtcgtttcgggtcgccacttcgatacctggtggaaaacgcagccg
caggacagcctgaacttcgaaaaaagcatgctgatcaaagagggggcgggcaacatcagc
gcgcatgattaccccaacttctggcatcagggcaacatcaaactgcgcgtcacataccag
tttgagccgggcaccgacgccgacggcgtaaccgtgcatatcccgctgccgctgcttaat
caggtgagcgaagaagggttcgactggcagatccccggtattcgccgcgagctgattatg
gcgctgattaaatcactgcctaagccgttacgccgtaactttgttcccgcgccaaactac
gcggatgcgctgatggggcgcatcaaaccgttcgaaatgccattgctggatgcgatggaa
agagaattgcgtaagatgagcggcgtgacgttgtcacgtgaagactggcaactggatcag
gtacccgatcatcttaaaatgacgttccgcattgttgatgacaaaaacaaaacgctgcgt
gaaggcaaagacctgacggcgctaaaatccggcctgaaagagcaggtgcagcagacgctt
tccgccgtcgcggatgacggcatcgagcagcgtgacctgcacgtctggagttttggtacg
ttacctgagcgctacgaacaaaagcgcggtggctatgaagtgaaggcctatccggcaatt
gtcgatgaaaaagacagtatcgccatccgcttgtttgacagtgaacttgagcagcaacag
gccatgtggggcgggatgcgacgtttactgctgctgaatattccctcgccgattaaatat
ctgcacgacaaactgcccaacaaagccaagctcggtttgtactttaacccgtacggcaaa
gtgcttgatttgattgacgactgtatctcatgcggtatcgataaactcatcgctgaatcc
ggtggcttagtctggcgtgaagaagatttcgcaaaactgcacgagcatgtgcgcgctaat
ctcaacgacgccgtggtgcaaattgccattcaggtcgaacagatcctgaccaccgttttc
aacatcaataaacggctgaaagggcggattgatatcaccatggcgctggcgctttctgat
attaaatcgcagatgtcaggtctgatttaccgtggttttgttacgcaaaacggctggaaa
cgtctgcctgatacattgcgatatctccacgctatcgagcgccggatggataaactggcg
atggatccacaccgtgaccgcgcgcaaatgttgaaagtagaaagcatccagaaacagtgg
cagcagtggctgaataaactgcctccggtgcgtcagcaaagtgaagacgtgaaggaagtg
cgctggatgatcgaagagctacgcgtaagctattttgcccagcaactggggacgccgtat
ccgatttcggataaaaggatttcgcagaccatggaacagctggtgtag
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